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Report for CCDS37744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37744.1 Public Mus musculus 18 Dsc3 23 108 98 CCDS HistoryNCBI Gene:13507Re-query CCDS DB by CCDS ID:37744.1Re-query CCDS DB by GeneID:13507See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 37744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225110.1 ENSMUSP00000153261.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225110.1Link to Ensembl Protein Viewer:ENSMUSP00000153261.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225110Re-query CCDS DB by Protein ID:ENSMUSP00000153261
Original member Current member NCBI NM_007882.3 NP_031908.3 Accepted alive Link to Nucleotide Sequence:NM_007882.3Link to Protein Sequence:NP_031908.3Re-query CCDS DB by Nucleotide ID:NM_007882Re-query CCDS DB by Protein ID:NP_031908Link to BLAST:NP_031908.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031908.3 896 P55850-1 896 100% 0 0

Chromosomal Locations for CCDS 37744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 19963372 19963569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19965628 19965882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19966220 19966341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19968219 19968443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19971378 19971602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19973784 19973926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19974040 19974299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19980601 19980786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19981119 19981253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19983536 19983702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19985631 19985775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19986970 19987125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19988273 19988392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19989512 19989711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 19991512 19991596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20001857 20001925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2691 nt):
ATGGTGGTTCCTGAGTTCCGGAGCCCACAGTGCAGGGCACTATGCACGAAGCTGCTGCTGACCCTCTGGG
TCTTCAGTTTTGTTGGTGAAGCCTGTAAAAAGGTGACATTTCATGTACCTTCAACACTAGAGGCAGACAA
GATCATCGGAAGAGTTAGTTTGAAAGAGTGTCTCAGCTCGGCAGATGGCATCATGCCAAGTGATCCTGAT
TTCAGAGTTCTAGATGATGGGTCAGTTTATCCGACCAGAGCTGTTGTATTGTCTGATGAGAAAAGATCTT
TTACCATTCAGCTTTCTGATTCAAAGATGCAGACACAGAAAGAGATCCCTGTAATCCTGGAGCACAAGAA
GAAGGTACTGAAGAAAAGACACACTAAGGAAACTGTCCTCAGAAGATCTAAGAGAAGATGGGCACCCATT
CCATGTTCAATGCAAGAAAATTCCTTGGGTCCCTTCCCATTGTTTCTTCAACAGGTTCAGTCTGATGCAG
CTCAGAACTACACAGTCTTCTATTCAATAAGTGGGCGTGGAGCTGATCAAGAACCACTTAACTGGTTTTT
CATCGAGAGAGACACTGGGAATCTATATTGTACTCGGCCTGTGGATCGTGAGGAATATGATGTTTTTGAT
TTGATTGCCTATGCATCCACTGCAGATGGCTATTCAGCAGATTTACCTCTCCCACTGCCCATCAAAATAG
AGGATGAAAATGACAATTACCCTCTTTTTACAGAAGCAATTTATGCTTTTGAAGTTCCAGAAGGCAGTAG
ACTTGGTACTGTAGTGGGAACAGTTTGTGCCACGGATAAAGATGAGCCTGACACTATGCACACACGCCTC
AAGTACAGCATCTTGGAGCAGACCCCACCATCACCTGGGCTTTTTTCTGTGCACCCTGACACAGGTGTCA
TCACCACCGTCTCTCACTACATGGACAGAGAGGTCGTGGACAAGTACAAACTGATAATGAAAGTTCAGGA
CATGAATGGCCAATTTTTTGGACTAATCAGTACATCAACTTGTATCATAACTGTGCAAGATTCCAATGAC
AATGCACCCACATTCAGACAAAATACTTATGAAACTGCTGTGGAGGAAAATACATATAATGTTGAAATCT
TGCGCATACCTGTAGATGATAAGGACATGATTAACACTGCCAACTGGAAGGCAAATTTCACCATCTTAAA
AGGAAATGAAAATGGATGGTTCAAAATCACAACAGACCCAGTGACAAATGAAGGTGTTCTGTGTGTTGTG
AAGCCACTGGATTATGAAGAAAATCGTCAAGTGACCCTAGAGATTGGTGTGAACAACGAAGCTCCATTCA
TTAAAGATGTTGCAAACCGAATTCCCACCATGAACCGGGCTATGGTTACAGTACATGTGAAGGATCAGAA
TGAGGGGCCAGAATGCAAGCCCCCAGAGCAATATGTGCGGATCAAAGAGAACTCAGCAGTTGGGTCTAAG
ATCAATGGCTACAAGGCCTACGACCCTGAAACCAAGAATAGCAATGGCTTAAGGTACAAAAAATTGCAGG
ATCCTAAAGACTGGGTCAGCATTGAAGAAGTTTCGGGGTTGCTTACCATATCAAAAACCCTAGACAGAGA
AATAATGGCTCCAAGAAATGACATGTACAATATTACAGTCATGGCAATTGACCAAGAGGGTAAATCATGC
ACAGGAACACTTGCAGTGAACATCGAGGATGTGAATGACAACGCACCAGAGATAATTCAAGATTATATTG
TTATCTGTAAGCCAAAGATGGGGTACACGGACATTTCAGCTGTGGATCCTGATGAACCTATCCATGGCCC
TCCCTTTCAGTTCAACTTGGCAAACACTTCTCCAGAAGTCAACAGAATCTGGACCCTCAACCAAGTTAAT
GATACAGCTGCTCGCCTGTCCTATCAGAAAACTGCGGATGTTCAAATATACAACGTTCCTGTTACTGTAA
AAGACAGAGCAGGCCAATCTGCAACCAAAATCTTGAGAGTTAACCTGTGTGATTGTACTCATCCCAGCCA
ATGTCCGCTCAGATCAAGGAGTGCAGGAATTACCCTGGGAAAGTGGGCCATCCTTGCCATCTTGCTGGGC
ATTGCTCTGCTATTTTCGGTACTGCTAACTTTGGTATGTGGAGTTGTTACTGCCCGAAAAGGAAAACACT
TCCCTGAAGATTTAGCGCAGCAAAACTTAATTATATCAAATACCGAAGCACCTGGGGATGACAGAGTGTG
CTCTGCCAATGGATTCACCACCCACACTGCCAACAACTCCAGCCAAGGCTTCTGTGGTACAATGGGGTCA
GGAATGAGGAATGGTGGGCAGGAGACCATCGAGATGATGAAAGGACACCAGACCTTGGACTCCTGCCGTG
TGGCCGGGCATCACCATACCCTGGACTCCGGCAGGGGAGGACACATGGATACTGACAACTGCAGATACAC
ATACTCAGAGTGGCACAGTTTCACTCAACCCCGACTTGGTGAAAAATTGCATGTGTGTAATCAGAATGAA
GACCACATCCCATCCCAAGACTATGTCCTCACCTATAACTATGAAGGCAGAGGGTCTCCGGCCGGCTCTG
TAGGTTGCTGCAGTGAAAAGCAGGAAGAAGAGGGACTTGACTTTTTAAACAACTTGGAACCCAAATTTCT
TACATTGGCAGAAACATGCACAAAGAGATAA

Translation (896 aa):
MVVPEFRSPQCRALCTKLLLTLWVFSFVGEACKKVTFHVPSTLEADKIIGRVSLKECLSSADGIMPSDPD
FRVLDDGSVYPTRAVVLSDEKRSFTIQLSDSKMQTQKEIPVILEHKKKVLKKRHTKETVLRRSKRRWAPI
PCSMQENSLGPFPLFLQQVQSDAAQNYTVFYSISGRGADQEPLNWFFIERDTGNLYCTRPVDREEYDVFD
LIAYASTADGYSADLPLPLPIKIEDENDNYPLFTEAIYAFEVPEGSRLGTVVGTVCATDKDEPDTMHTRL
KYSILEQTPPSPGLFSVHPDTGVITTVSHYMDREVVDKYKLIMKVQDMNGQFFGLISTSTCIITVQDSND
NAPTFRQNTYETAVEENTYNVEILRIPVDDKDMINTANWKANFTILKGNENGWFKITTDPVTNEGVLCVV
KPLDYEENRQVTLEIGVNNEAPFIKDVANRIPTMNRAMVTVHVKDQNEGPECKPPEQYVRIKENSAVGSK
INGYKAYDPETKNSNGLRYKKLQDPKDWVSIEEVSGLLTISKTLDREIMAPRNDMYNITVMAIDQEGKSC
TGTLAVNIEDVNDNAPEIIQDYIVICKPKMGYTDISAVDPDEPIHGPPFQFNLANTSPEVNRIWTLNQVN
DTAARLSYQKTADVQIYNVPVTVKDRAGQSATKILRVNLCDCTHPSQCPLRSRSAGITLGKWAILAILLG
IALLFSVLLTLVCGVVTARKGKHFPEDLAQQNLIISNTEAPGDDRVCSANGFTTHTANNSSQGFCGTMGS
GMRNGGQETIEMMKGHQTLDSCRVAGHHHTLDSGRGGHMDTDNCRYTYSEWHSFTQPRLGEKLHVCNQNE
DHIPSQDYVLTYNYEGRGSPAGSVGCCSEKQEEEGLDFLNNLEPKFLTLAETCTKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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