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Report for CCDS29632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29632.1 Public Mus musculus 19 Fam111a 23 108 98 CCDS HistoryNCBI Gene:107373Re-query CCDS DB by CCDS ID:29632.1Re-query CCDS DB by GeneID:107373See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29632.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025595.4 ENSMUSP00000025595.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025595.4Link to Ensembl Protein Viewer:ENSMUSP00000025595.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025595Re-query CCDS DB by Protein ID:ENSMUSP00000025595
Original member Current member EBI ENSMUST00000144662.7 ENSMUSP00000119518.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144662.7Link to Ensembl Protein Viewer:ENSMUSP00000119518.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144662Re-query CCDS DB by Protein ID:ENSMUSP00000119518
Original member Current member NCBI NM_026640.2 NP_080916.1 Accepted alive Link to Nucleotide Sequence:NM_026640.2Link to Protein Sequence:NP_080916.1Re-query CCDS DB by Nucleotide ID:NM_026640Re-query CCDS DB by Protein ID:NP_080916Link to BLAST:NP_080916.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080916.1 613 Q9D2L9 613 100% 0 0

Chromosomal Locations for CCDS 29632.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12584045 12584122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12586835 12588598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGAGCTGTAAGAAGCGGAAATCACAGATCTCATTTAATCCAAGGAAAAATAAAAAAATTAAGGACTATT
TCTCTCAGGTCCCCAAAGAAGAGCAGAATGACCCCAACACAGTAAAAGTGGACTCTAAAAAAATGCCAAG
GGATATAACCAACACCAGGGACCAAAGACCACTTTCACCCAGGAAAACTCGACAAGATCAGACTCCTCCC
CTAAATAAGAAAATCACAGTAACCTTGGGTGTGAACTCTAGGAAACACAAAAACATGAAATATGAGCTCA
CGTGTAGGGAGACAAGCAGCTTGTATGCAGCACTCAACACTCTCAGTGCTGTCAGAGAAGAGGTAGAAAG
TCAAAAGGGCAGAGAAATGCTGGTGTGTGGCAAAGAAGGAATTGAAGGGTACTTAAACCTTGGCATGCCC
GTCTGCTGTATACCAGAAGGCAGCCATGTCGTCATTACATTTTGTCAATGTAAAAGTAAGACACAGGAAA
ATAAACAATTCTTTGAATCACAGGACCAAGCATCTACCAATTACGTCCGATTTTGCATTCATGCAGTTGG
GAGTAAGAGGAAAAAGATTCTGAAGTGTGGAGAACTTCAGAAAGAGGGGAACAAACTCTGTGTCTATGGC
TTCAAAGGAGAGACCATCAGGGACACTCTGAGGAAGGATGGCAGGTTTTGTACTTTCATAGAGAGTGACG
ATTGGAAACTCATTAATGACCTGGACACCATCATAGAAAACACACAGCCAGTTGATGAGTTAGAGGGCAA
GCTTTTTCAGGTTGCAGCTGAGCTACCAAAGAACCCCAGAGTAGTCTCTGTCACTCAGAATTCTGGGTCA
GAGAACAGAAACTTTCATAAGCTAGAAGAGTACATTGTGAATGAGTACACTACATTGAAAGAAGAAGGAA
AAAAACTTAGAGCATACATCAAGGAAAAAAGTGAAAAAAGGAAGAAGAAAGCTTCCTTATTCAAAGTGCA
TAAAGAACACTTTGGGAAAATGACAAGAAATTCTACTCCTGTTAAAGTGGTCAAACATCTTTCGAGGGTC
AGTGACTCAGTTGGGTTCCTATGGTGGAACAACAATGGAAATGCAGGCTGTGCCACCTGCTTTGTTTTTA
AAGAGTTGTACATTTTGACTTGTCAGCATGTGATAGCTAGCATTGTGGGTGAAGGCATAGATTCAAGTGA
GTGGGCAAACATAATTAGTCAGTGTGTAAAGGTGACCTTTGATTATGAAGAGTTACTACCAACAGGAGAC
AAGTTTTTTATGGTTAAACCTTGGTTTGAAATATCTGATAAACACCTTGACTATGCTGTCCTGGAACTGA
AGGAAAATGGACAAGAAGTACCTGCTGGGCTGTATCATAGAATAAGACCTGTGCCACATAGTGGGTTGAT
TTATATCATTGGCCATCCTGAGGGAGAAAAGAAGTCTATTGATTGCTGTACAGTGGTCCCTCAAAGTAGT
AGAAGAAAAAAATGTCAGGAAAATTTTCAAGCAAGAGAGGAAGCAGGCTTCTGTTTTTCTACATCTTTTA
TCCATATGTACACACAAAGAAGTTTCCAGGAAATGCTTCACAACTCTGATGTGGTTACTTATGACACCAG
TTTTTTTGGTGGGTCTTCTGGATCCCCAGTATTTGATTCTAATGGTTCATTGGTGGCCATGCATGCTGCT
GGCATCACTTGTACATACCAGGCTGGAGTTTCCAATATCATTGAGTTTGGTTCTATTATGGAATCCATTG
ATGATCATATGAAGCAAGATAAATATAAAGAGTGGTATAACACAATTTCTGGAAATGTTCAGAATGTAGA
AATGCTGAGCATAGATTTCTGA

Translation (613 aa):
MSCKKRKSQISFNPRKNKKIKDYFSQVPKEEQNDPNTVKVDSKKMPRDITNTRDQRPLSPRKTRQDQTPP
LNKKITVTLGVNSRKHKNMKYELTCRETSSLYAALNTLSAVREEVESQKGREMLVCGKEGIEGYLNLGMP
VCCIPEGSHVVITFCQCKSKTQENKQFFESQDQASTNYVRFCIHAVGSKRKKILKCGELQKEGNKLCVYG
FKGETIRDTLRKDGRFCTFIESDDWKLINDLDTIIENTQPVDELEGKLFQVAAELPKNPRVVSVTQNSGS
ENRNFHKLEEYIVNEYTTLKEEGKKLRAYIKEKSEKRKKKASLFKVHKEHFGKMTRNSTPVKVVKHLSRV
SDSVGFLWWNNNGNAGCATCFVFKELYILTCQHVIASIVGEGIDSSEWANIISQCVKVTFDYEELLPTGD
KFFMVKPWFEISDKHLDYAVLELKENGQEVPAGLYHRIRPVPHSGLIYIIGHPEGEKKSIDCCTVVPQSS
RRKKCQENFQAREEAGFCFSTSFIHMYTQRSFQEMLHNSDVVTYDTSFFGGSSGSPVFDSNGSLVAMHAA
GITCTYQAGVSNIIEFGSIMESIDDHMKQDKYKEWYNTISGNVQNVEMLSIDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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