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Report for CCDS16310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16310.1 Public Mus musculus 2 Or12e10 23 108 98 CCDS HistoryNCBI Gene:258317Re-query CCDS DB by CCDS ID:16310.1Re-query CCDS DB by GeneID:258317See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090707.1 ENSMUSP00000088209.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090707.1Link to Ensembl Protein Viewer:ENSMUSP00000088209.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000090707Re-query CCDS DB by Protein ID:ENSMUSP00000088209
Original member Current member NCBI NM_146320.2 NP_666432.2 Accepted alive Link to Nucleotide Sequence:NM_146320.2Link to Protein Sequence:NP_666432.2Re-query CCDS DB by Nucleotide ID:NM_146320Re-query CCDS DB by Protein ID:NP_666432Link to BLAST:NP_666432.2

Chromosomal Locations for CCDS 16310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87809822 87810799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGACTCAGACTCCGACTAAATCCTTTCTACAGATGAAACATGATGAAATTGAGGCAGAAGTCAACATTT
CTACAGTGATACAATTTGTTCTGCTGGGATTCTCTGCTCTTCCCAATCTCCAAGGGATTCTGTCTGCACT
GTTCTCCATCATTTACAGGATTATCCTCACTGGCAATTGCCTCATTATATTAATAACTAGGCTTGACCAT
ACATTGCATAAACCCATGTATTTTTTTCTGGCAAATTTTTCCTCTCTGGAAATCTGTTATGTATCAGTGA
CTGTCCCAAGAATTCTTTTCAACATTTGGACACAGGATAGAAACATTTCTGTGCTGGCTTGTGCTGTGCA
GATGTGTTTTTTTCTTATGTTGGGAACTGATGAATGTTTCCTTCTGGCTGTGATGTCCTATGATCGCTAT
GTGGCCATTTGCAACCCTTTGCACTATCCTTTGATCATGAACTCAAAAAAGTGCACTCAGTTGGCAGCAG
GCTCCTGGCTAAGTGGCATTCCAATTCAGATTGGACAAACCTGTTGGATATTTTCTATGCATTTCTGTGA
TTCCAATGAAATAGACCACTTCTTTTGTGACATACCACCAATTCTCAAGCTGGCATGTGGGGACACTTCA
GTGCATGAATTGTCTGTCTATGTGGTTGTTATGGTTGTGGCTGCATTCCCCTTTATACTGGTGCTTACAT
CCTACAGCAAAATCATTGCCACCATCTTGAGGTTGCCAACAGCCAAAGGGCGGGCAAAAGCCTTCTCCAC
TTGTTCTTCCCACCTCCTGGTGGTGGTTTTGTTTTATGGGTCTGGCACCATTACATACTTGAGGCCAAAG
TCTACGCATTCCCCTGGAATTGATAAATTGCTGTCTCTGTTCTATACCATTGTGACTCCCATGTTCAATC
CCTTAATATACAGCCTTAGGAACAAGGAGGTGGTTGTTGCTCTAAGAAAACTCATACTCCAAAAATAG

Translation (325 aa):
MTQTPTKSFLQMKHDEIEAEVNISTVIQFVLLGFSALPNLQGILSALFSIIYRIILTGNCLIILITRLDH
TLHKPMYFFLANFSSLEICYVSVTVPRILFNIWTQDRNISVLACAVQMCFFLMLGTDECFLLAVMSYDRY
VAICNPLHYPLIMNSKKCTQLAAGSWLSGIPIQIGQTCWIFSMHFCDSNEIDHFFCDIPPILKLACGDTS
VHELSVYVVVMVVAAFPFILVLTSYSKIIATILRLPTAKGRAKAFSTCSSHLLVVVLFYGSGTITYLRPK
STHSPGIDKLLSLFYTIVTPMFNPLIYSLRNKEVVVALRKLILQK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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