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Report for CCDS16646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16646.1 Public Mus musculus 2 Serinc4 23 108 98 CCDS HistoryNCBI Gene:574418Re-query CCDS DB by CCDS ID:16646.1Re-query CCDS DB by GeneID:574418See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056312.9 ENSMUSP00000051261.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056312.9Link to Ensembl Protein Viewer:ENSMUSP00000051261.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056312Re-query CCDS DB by Protein ID:ENSMUSP00000051261
Original member Current member NCBI NM_001025371.2 NP_001020542.1 Accepted alive Link to Nucleotide Sequence:NM_001025371.2Link to Protein Sequence:NP_001020542.1Re-query CCDS DB by Nucleotide ID:NM_001025371Re-query CCDS DB by Protein ID:NP_001020542Link to BLAST:NP_001020542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020542.1 492 Q5XK03 492 100% 0 0

Chromosomal Locations for CCDS 16646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121452021 121452174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121452355 121452505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121452632 121452680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121453096 121453168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121453482 121453608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121453709 121453804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121453998 121454209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121454944 121455037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121455276 121455355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121455663 121455841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121455991 121456155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121456455 121456553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGATGGGTGCAAAAGTTGTCACCGGCCGGAGCACCACCCAGGGTCTTGCACAGCAGCACGGTGGAGTCA
GTAATGTAGTGGAAACCCCCTTCAATCAGGCATCCTGCTGTGGACCTGTTTCTTGGACCAGTGGCTGCCA
CTCTCTGACAGAGTCTAGGTGTAGCCGCCTGCTCTACATCCTCCTCCACGTGGGAGCCTCAGCAATCTGC
TGCCTCCTGCTTTCGAAGACAGTGGTAGAAAGGGTCTGGGGCAAAGCACATGGGATCCAGATGCCCTCAG
TGCTATGTGCCCACCTGTTTGGCAGCTCGGACTGCCCAGTTCTCAGTGGCTCTGGCGCTGTGTATCGAGT
GTGTGCAGGAACTGCCACCTTCCACCTGCTGCAGGCTGTGCTGCTAGTTCGCCTCCACTCCCCCACCAAC
CCTCGGGCACAGCTGCATAACAGCTTCTGGAGCCTCAAGCTGTTGTTCCTGTTAGGTCTCTGTGTCGTTG
CCTTCTGCATCCCTGATGAGGATCTCTTCCCAGCCTGGCATTATATTGGCATCTGTGGAGGCTTCACATT
CATCCTATTACAGCTGGTGCTTATCACAGCCTTTGCCCAGTCCTGGAACAAGAATTGGCAGACTGGTGCA
GCTCAAGACTGTAGCTGGCTCCTAGGTGTGTCACTGGCCACACTAGGGTTCTACAGCATGGCGGGTGTGG
GAGCTGTGTTGCTGTTCCACCAGTACACACACCCTGACGGTTGCCTGCTCAACAAGATGTTACTCAGTCT
GCACCTTTGCTTCTGTGGCCTCCTGTCTCTCCTCTCCATCGCACCTTGCATCCGCCGCAAGCAACCAAAC
TCTGGCCTCCTACAAGCCTCTATCATCAGCTGCTATATCATGTATCTGACCTTCTCTGCACTGTCCAGCC
GTCCCCCAGAGACAATAACCTTTCAAGGACAGAATCACACCTTGTGTCTGCCTGGCCGGAATAAAATGGA
ACCACAAATACCGGATACCTCAGTAGCAGTGTTTAGTGCTGGCATCATGTATGCTTGTGTGCTCTTTGCT
TGCAACGAGGCTTCCTACCTGGCCGAGTTATTTGGACCCTTGTGGATTATCAAGGTTTACAAGTATGAGT
TCCAGAAGCCCTCAGTCTGTTTCTGCTGCCCCCAAACAGTGGAGCCAGAGGATGGGCAAAGGAGCAGGGC
CAGGTCAGCTGACCAAGAGACCCCTCCAGCTGCTCAGGTGCAGAGCCAGCATCTTTCCTACAGCTACTCT
GGCTTCCACTTCGCCTTCTTCCTTGCTTCACTCTATGTCATGGTTACCCTTACCAACTGGTTCAGCTATG
AGGAAGCAGAACTGGAGAAGACCTTCACTAAGGGTAGCTGGGCTACCTTCTGGGTTAAAGTTGCCTCATG
CTGGGCCTGTGTCCTCCTCTATCTGGGGCTGCTCCTGGCACCACTGCTGGCTCCCCACTCAGAATCACCA
CCACCCTAG

Translation (492 aa):
MMGAKVVTGRSTTQGLAQQHGGVSNVVETPFNQASCCGPVSWTSGCHSLTESRCSRLLYILLHVGASAIC
CLLLSKTVVERVWGKAHGIQMPSVLCAHLFGSSDCPVLSGSGAVYRVCAGTATFHLLQAVLLVRLHSPTN
PRAQLHNSFWSLKLLFLLGLCVVAFCIPDEDLFPAWHYIGICGGFTFILLQLVLITAFAQSWNKNWQTGA
AQDCSWLLGVSLATLGFYSMAGVGAVLLFHQYTHPDGCLLNKMLLSLHLCFCGLLSLLSIAPCIRRKQPN
SGLLQASIISCYIMYLTFSALSSRPPETITFQGQNHTLCLPGRNKMEPQIPDTSVAVFSAGIMYACVLFA
CNEASYLAELFGPLWIIKVYKYEFQKPSVCFCCPQTVEPEDGQRSRARSADQETPPAAQVQSQHLSYSYS
GFHFAFFLASLYVMVTLTNWFSYEEAELEKTFTKGSWATFWVKVASCWACVLLYLGLLLAPLLAPHSESP
PP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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