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Report for CCDS16871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16871.1 Public Mus musculus 2 Snph 23 108 98 CCDS HistoryNCBI Gene:241727Re-query CCDS DB by CCDS ID:16871.1Re-query CCDS DB by GeneID:241727See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028951.13 ENSMUSP00000028951.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028951.13Link to Ensembl Protein Viewer:ENSMUSP00000028951.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028951Re-query CCDS DB by Protein ID:ENSMUSP00000028951
Original member Current member EBI ENSMUST00000109875.7 ENSMUSP00000105501.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109875.7Link to Ensembl Protein Viewer:ENSMUSP00000105501.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109875Re-query CCDS DB by Protein ID:ENSMUSP00000105501
Original member Current member NCBI NM_198214.3 NP_937857.1 Accepted alive Link to Nucleotide Sequence:NM_198214.3Link to Protein Sequence:NP_937857.1Re-query CCDS DB by Nucleotide ID:NM_198214Re-query CCDS DB by Protein ID:NP_937857Link to BLAST:NP_937857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937857.1 528 Q80U23-2 528 100% 0 0

Chromosomal Locations for CCDS 16871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151593420 151594599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151597109 151597258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151600257 151600463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151600978 151601027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCCATGTCCCTGCAGGGAAGTAGACGAGCCTCTGCCGGATCTCGCAGCGGGGGCACTTTAGGCCGTA
GCGGCCTGGCAGTGTTCGCCCAGTGCCCACAGGTGCCCGCCAGCCAGAATGAGCAGCGGCCTCTTCTCCC
CGCCTCCAGGCGCACCTCTCCACCTGTGAGTGTGCGGGACGCCTACGGCACCTCTTCCCTCAGCAGCAGC
AGCAACTCTGGCTCCTGCAAGGGCAGTGACAGCAGCCCCACACCGAGGCGCTCCATGAAGTACACACTAT
GCAGCGACAATCACGGCATCAAGCCTCCCACCCCAGAACAGTATCTGACTCCACTGCAACAGAAGGAGGT
TTGCATCCGGCACCTGAAGGCCCGGCTCAAGGACACACAGGACCGGCTCCAGGATAGGGACACGGAGATC
GATGACCTTAAGACGCAGCTGTCCCGCATGCAAGAGGACTGGATTGAGGAGGAGTGCCACCGCGTAGAAG
CACAGCTGGCCCTGAAAGAGGCCCGCAAGGAGATCCGGCAGCTCAAGCAGGTCATCGACACTGTCAAGAA
CAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTACTTTGTGGACATCAATATCCAGAACAAGAAGCTG
GAGACCTTGCTGCACAGCATGGAGGTGGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAGGGGAGTCAG
CAGGTGGGTCTCCTGCACGGTCCCTCACCCGCAGCTCCACCTACACCAAGCTGAGTGACCCAGCCGTCTG
TGGTGACCGCCAGCCAGGGGATCCCTCCAACACCTCTGCCGAGGATGGAGCTGATAGTGGATATGTGGCT
GCCGATGACACCCTGAGTCGGACGGACGCCCTGGAGGCCAGTAGCCTACTGTCATCAGGAGTGGACTGTG
GCCTTGAGGAAGCCTCGCTGCACAGCTCCTTCAACCTGGGCCCCCGCTTCCCTGCCAGCAACACCTACGA
GAAGCTGCTGTGCGGCATGGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGCGGGCCATCCAGACAGAC
TTTGTGCAGTACCAGCCTGACCTGAACACCATCCTGGAGAAAGTGGGCCAGGCTCAGGTGTGCGGTTCAG
TCCTCAAAGACAGGCACTCAGAGCTGGATCCCCACCCTTCAGGGCCCAGAGACCCTGACTCAGCAGTGGT
AGTCACAGTAGGTGACGAGCTTGAGGCCCCAGAGCCCATCACCTGTGGGCCAGCCACACACCGGCCTGCA
GTCAACTCTAACCCAGGACTGCCCGTGAGTGTGGTGTGTCCCGTGGAAGAGGAGGAGGAGGAGGCAGCCG
CTGCCACCACCACCGAAAAGGAACCCAAGAGTTACTGGAGCCGCCACTACATCGTGGATCTGCTGGCTGT
GGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTCTGCCGCTCCCAGCGGCGTCAGGGCCAGCCCATTTAC
AACATCAGCTCCCTGCTGCGGGGTTGCTGCACGGTGGCCTTGCACTCCATCCGTAGGATCAGCTGCCGCT
CACTGGGCCAGCCGAGCTCCAGCACAGCCGGTGGCTCTCAGCTCTGA

Translation (528 aa):
MAMSLQGSRRASAGSRSGGTLGRSGLAVFAQCPQVPASQNEQRPLLPASRRTSPPVSVRDAYGTSSLSSS
SNSGSCKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDTQDRLQDRDTEI
DDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQKYFVDINIQNKKL
ETLLHSMEVAQNGVAKEEGTGESAGGSPARSLTRSSTYTKLSDPAVCGDRQPGDPSNTSAEDGADSGYVA
ADDTLSRTDALEASSLLSSGVDCGLEEASLHSSFNLGPRFPASNTYEKLLCGMEAGVQVSCMQERAIQTD
FVQYQPDLNTILEKVGQAQVCGSVLKDRHSELDPHPSGPRDPDSAVVVTVGDELEAPEPITCGPATHRPA
VNSNPGLPVSVVCPVEEEEEEAAAATTTEKEPKSYWSRHYIVDLLAVVVPAVPTVAWLCRSQRRQGQPIY
NISSLLRGCCTVALHSIRRISCRSLGQPSSSTAGGSQL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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