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Report for CCDS89574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89574.1 Public Mus musculus 2 Bpi 23 108 98 CCDS HistoryNCBI Gene:329547Re-query CCDS DB by CCDS ID:89574.1Re-query CCDS DB by GeneID:329547See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109499.7 ENSMUSP00000105125.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109499.7Link to Ensembl Protein Viewer:ENSMUSP00000105125.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109499Re-query CCDS DB by Protein ID:ENSMUSP00000105125
Original member Current member NCBI NM_001356542.1 NP_001343471.1 Accepted alive Link to Nucleotide Sequence:NM_001356542.1Link to Protein Sequence:NP_001343471.1Re-query CCDS DB by Nucleotide ID:NM_001356542Re-query CCDS DB by Protein ID:NP_001343471Link to BLAST:NP_001343471.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343471.1 483 Q67E05-1 483 100% 0 0

Chromosomal Locations for CCDS 89574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 158258295 158258424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158261067 158261181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158261332 158261460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158262353 158262511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158263445 158263508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158267731 158267794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158268842 158268933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158271937 158272113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158273151 158273210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158274675 158274842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158275922 158275989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158276958 158277003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158281455 158281518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158282244 158282320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158284229 158284267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGACCTGGGCCCCTGACAACGTGCGGAAATGGTCAGCCCTGTTGCTGCTGGCCATCATTGGCACAGCCC
TGACAGCCGCCACCGACCCTGGCTTCGTGGCCATGATCTCCCAGAAGGGTCTGGACTTCGCGTGCCAGCA
GGGAGTGGTTGAGTTGCAGAAGGAGCTACAGGCTATCAGTGTTCCTGACTTCTCTGGGGTCTTTAAGATC
AAGCACCTGGGAAAGGGTTCCTACGAATTCTACAGCATGGCTGTGGATGGATTTCATATTCCTAATCCCA
AGATCGAGATGCTGCCCAGTGATGGCCTCCGAGTGTTCATCAAAGATGCCAGCATCAAGATCAATGGAAA
GTGGATGTCAAGGAAGAACTTCCTCAAGGCCGGTGGCAATTTTGAACTGAGCATCCAGGGCGTCTCCATC
TCCACCGACCTGATTCTGGGTAGTGACTCCTCAGGCCACATCACCACCATCTGCTCCAACTGCGACAGTC
ACATTGACAGTGTCCATATCAAAATCTCAGGCAGCATGCTGGGGTGGCTGATCCGACTGTTCCACAGGAA
AATTGAGACTTCCCTGAAAAACATCATTTACAAAAAGATCTGCAAGATCGTGAGAGACTCTGTGTCCTCC
AAACTGCAGCCTTATCTGAAGACCCTTTCTGTGATAACCAGAGTGGATGATGTGACCTCGGTTGACTACA
GTCTGCTGGCTCCCCTGACAACCACGAACCAGTTCCTGGAGGGGCAGCTAAAGGGGGAGTTTTTCTGGAG
GGGACACCGAGACCCACTTCCCATTCACCCGCCAGTAATGAGGTTTGTGCCCAACGGTGCATACATGGTA
TGCATGGGCATCTCTGACTACTTCTTCAACACTGAGGTATTGGCTTACCAACAGTCTGGAACCTTGAAGA
TGACCCTGGGGGGCCAACTGTTATCAAATAATGGCAGATTCCAGCTGAACACTGACTTCCTTAGGACCTT
CCTGCCCAAGGTGGCCAAGATGTTCCCCAGCATGGGGGTGCAGCTGCTCATCTCAGCGCCCGTGCCTGTG
CACCTGAGCATACAGCCCTCAGGCCTCTCATTCAATCCTAAGCTGGAGACCCAGGCCTTTGTGGTCCTCC
CCAACGCCTCCCTGGTCCCTCTCTTTGTTCTTGGCATGAAAACAAATGCCTCTTTGGAAGTGGATGCTGA
GGAGAACAGGCTCGTGGGAGAGATGAAGCTTGGCAGCAGGTGGTTGCTGGAATTGAAGGAATCCAAATTT
GGCCCCTTTAAGGTGGAGTACCTGGAGGATGTCATAAACTACCTCGTATCCACACTAGTGCTGCCCAAGA
TCAATGAGAGGCTGCGTAGAGGCTTCCCTCTCCCTTTGCCTGCTGGGATCCGGTTCAGCCACTTCACGTT
TTACCCCTACCAGAATTTCCTGTTGCTTGAAGCGGATTTACACCTTATCTAA

Translation (483 aa):
MTWAPDNVRKWSALLLLAIIGTALTAATDPGFVAMISQKGLDFACQQGVVELQKELQAISVPDFSGVFKI
KHLGKGSYEFYSMAVDGFHIPNPKIEMLPSDGLRVFIKDASIKINGKWMSRKNFLKAGGNFELSIQGVSI
STDLILGSDSSGHITTICSNCDSHIDSVHIKISGSMLGWLIRLFHRKIETSLKNIIYKKICKIVRDSVSS
KLQPYLKTLSVITRVDDVTSVDYSLLAPLTTTNQFLEGQLKGEFFWRGHRDPLPIHPPVMRFVPNGAYMV
CMGISDYFFNTEVLAYQQSGTLKMTLGGQLLSNNGRFQLNTDFLRTFLPKVAKMFPSMGVQLLISAPVPV
HLSIQPSGLSFNPKLETQAFVVLPNASLVPLFVLGMKTNASLEVDAEENRLVGEMKLGSRWLLELKESKF
GPFKVEYLEDVINYLVSTLVLPKINERLRRGFPLPLPAGIRFSHFTFYPYQNFLLLEADLHLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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