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Report for CCDS19758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19758.1 Public Mus musculus 5 Cldn15 23 108 98 CCDS HistoryNCBI Gene:60363Re-query CCDS DB by CCDS ID:19758.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001790.5 ENSMUSP00000001790.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001790.5Link to Ensembl Protein Viewer:ENSMUSP00000001790.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001790Re-query CCDS DB by Protein ID:ENSMUSP00000001790
Original member Current member EBI ENSMUST00000111093.7 ENSMUSP00000106722.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111093.7Link to Ensembl Protein Viewer:ENSMUSP00000106722.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111093Re-query CCDS DB by Protein ID:ENSMUSP00000106722
Original member Current member NCBI NM_021719.4 NP_068365.1 Accepted alive Link to Nucleotide Sequence:NM_021719.4Link to Protein Sequence:NP_068365.1Re-query CCDS DB by Nucleotide ID:NM_021719Re-query CCDS DB by Protein ID:NP_068365Link to BLAST:NP_068365.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068365.1 227 Q9Z0S5 227 100% 0 0

Chromosomal Locations for CCDS 19758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136968107 136968323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136972320 136972484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136974441 136974522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136974610 136974726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136974814 136974916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGTCGGTAGCTGTGGAGACCTTCGGCTTCTTCATGTCAGCCCTGGGACTGCTGATGCTGGGGTTGACCC
TTTCAAACAGCTACTGGAGAGTGTCTACGGTCCATGGCAACGTCATCACCACCAACACCATCTTTGAGAA
CCTGTGGTACAGCTGTGCCACCGACTCCCTGGGAGTCTCCAACTGCTGGGACTTTCCGTCCATGCTGGCC
CTCTCTGGGTATGTCCAGGGCTGCCGGGCTCTCATGATCACCGCCATCCTCCTGGGCTTCCTGGGCCTCT
TTCTAGGCATGGTGGGACTCCGCTGCACCAACGTGGGCAACATGGATCTCTCCAAGAAGGCCAAGCTGCT
GGCCATTGCAGGGACCCTCCACATACTTGCTGGAGCCTGTGGGATGGTGGCTATCTCGTGGTACGCCGTC
AACATCACTACTGACTTCTTCAACCCACTGTATGCTGGAACCAAGTATGAACTGGGCCCCGCCCTCTACT
TGGGCTGGAGTGCCTCCCTGCTCTCCATCCTGGGCGGCATCTGTGTCTTCTCCACCTGCTGCTGTTCCTC
CAAGGAGGAACCAGCCACCAGGGCTGGGCTTCCCTACAAGCCTTCTACGGTTGTGATACCCCGTGCCACC
TCGGATGAGAGTGACATCAGCTTCGGTAAATATGGCAAAAACGCATACGTGTAG

Translation (227 aa):
MSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTVHGNVITTNTIFENLWYSCATDSLGVSNCWDFPSMLA
LSGYVQGCRALMITAILLGFLGLFLGMVGLRCTNVGNMDLSKKAKLLAIAGTLHILAGACGMVAISWYAV
NITTDFFNPLYAGTKYELGPALYLGWSASLLSILGGICVFSTCCCSSKEEPATRAGLPYKPSTVVIPRAT
SDESDISFGKYGKNAYV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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