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Report for CCDS17297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17297.1 Public Mus musculus 3 Gnb4 23 108 98 CCDS HistoryNCBI Gene:14696Re-query CCDS DB by CCDS ID:17297.1Re-query CCDS DB by GeneID:14696See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108234.7 ENSMUSP00000103869.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108234.7Link to Ensembl Protein Viewer:ENSMUSP00000103869.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108234Re-query CCDS DB by Protein ID:ENSMUSP00000103869
Original member Current member EBI ENSMUST00000155737.7 ENSMUSP00000121127.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155737.7Link to Ensembl Protein Viewer:ENSMUSP00000121127.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155737Re-query CCDS DB by Protein ID:ENSMUSP00000121127
Original member NCBI NM_001348062.1 NP_001334991.1 Updated not alive Link to Nucleotide Sequence:NM_001348062.1Link to Protein Sequence:NP_001334991.1Re-query CCDS DB by Nucleotide ID:NM_001348062Re-query CCDS DB by Protein ID:NP_001334991
Current member NCBI NM_001348062.2 NP_001334991.1 Accepted alive Link to Nucleotide Sequence:NM_001348062.2Link to Protein Sequence:NP_001334991.1Re-query CCDS DB by Nucleotide ID:NM_001348062Re-query CCDS DB by Protein ID:NP_001334991Link to BLAST:NP_001334991.1
Original member NCBI NM_001348104.1 NP_001335033.1 Updated not alive Link to Nucleotide Sequence:NM_001348104.1Link to Protein Sequence:NP_001335033.1Re-query CCDS DB by Nucleotide ID:NM_001348104Re-query CCDS DB by Protein ID:NP_001335033
Current member NCBI NM_001348104.2 NP_001335033.1 Accepted alive Link to Nucleotide Sequence:NM_001348104.2Link to Protein Sequence:NP_001335033.1Re-query CCDS DB by Nucleotide ID:NM_001348104Re-query CCDS DB by Protein ID:NP_001335033Link to BLAST:NP_001335033.1
Original member NCBI NM_013531.5 NP_038559.2 Updated not alive Link to Nucleotide Sequence:NM_013531.5Link to Protein Sequence:NP_038559.2Re-query CCDS DB by Nucleotide ID:NM_013531Re-query CCDS DB by Protein ID:NP_038559
Current member NCBI NM_013531.6 NP_038559.2 Accepted alive Link to Nucleotide Sequence:NM_013531.6Link to Protein Sequence:NP_038559.2Re-query CCDS DB by Nucleotide ID:NM_013531Re-query CCDS DB by Protein ID:NP_038559Link to BLAST:NP_038559.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334991.1 340 P29387 340 100% 0 0
NP_001335033.1 340 P29387 340 100% 0 0
NP_038559.2 340 P29387 340 100% 0 0

Chromosomal Locations for CCDS 17297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32585120 32585226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32587561 32587777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32589709 32589910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32589997 32590063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32591111 32591273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32593158 32593221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32596277 32596383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32598126 32598164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32602045 32602101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGAGCGAGCTGGAGCAGCTGAGGCAGGAGGCTGAACAGCTTCGGAATCAGATCCAGGATGCTCGGAAGG
CCTGCAATGATGCCACGCTGGTTCAGATCACGTCTAATATGGACTCCGTGGGCCGAATACAAATGCGAAC
AAGGCGCACGCTGCGCGGCCACCTCGCTAAGATCTACGCCATGCACTGGGGATATGATTCCAGGCTACTA
GTCAGTGCTTCGCAAGATGGAAAATTAATTATTTGGGATAGCTATACGACAAATAAGATGCACGCCATCC
CTCTGAGGTCCTCCTGGGTGATGACCTGTGCCTACGCCCCGTCCGGGAACTACGTTGCCTGTGGAGGCTT
GGATAACATCTGCTCCATATACAACCTAAAGACCCGAGAGGGGAATGTGCGGGTGAGCCGAGAATTGCCA
GGACACACGGGCTACTTGTCCTGCTGCCGATTCTTAGATGATGGACAAATCATTACAAGTTCGGGAGACA
CGACTTGTGCTTTGTGGGACATTGAGACCGGACAGCAGACTACGACCTTCACGGGACACTCGGGTGACGT
GATGAGCCTCTCACTGAGTCCTGACTTGAAGACCTTTGTGTCTGGTGCTTGTGATGCATCCTCAAAGCTG
TGGGATATCCGAGATGGGATGTGTAGACAGTCTTTCACCGGACACATCTCAGACATCAACGCTGTCAGTT
TCTTCCCGAGTGGATATGCCTTTGCCACTGGTTCTGATGATGCCACATGCCGACTCTTTGACCTCCGTGC
AGACCAGGAGCTCCTGCTATACTCTCATGACAATATCATCTGTGGCATTACTTCTGTGGCCTTCTCAAAG
AGTGGGCGCCTCCTGTTAGCCGGCTATGACGACTTCAACTGCAGTGTGTGGGACGCTCTGAAAGGAGGCC
GGTCAGGTGTCCTTGCTGGTCATGACAACCGTGTTAGCTGCTTAGGTGTGACTGATGACGGCATGGCTGT
GGCCACTGGCTCCTGGGACAGTTTTCTTAGAATCTGGAATTGA

Translation (340 aa):
MSELEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHWGYDSRLL
VSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELP
GHTGYLSCCRFLDDGQIITSSGDTTCALWDIETGQQTTTFTGHSGDVMSLSLSPDLKTFVSGACDASSKL
WDIRDGMCRQSFTGHISDINAVSFFPSGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSK
SGRLLLAGYDDFNCSVWDALKGGRSGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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