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Report for CCDS17846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17846.1 Public Mus musculus 3 Npnt 23 108 98 CCDS HistoryNCBI Gene:114249Re-query CCDS DB by CCDS ID:17846.1Re-query CCDS DB by GeneID:114249See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042729.15 ENSMUSP00000040071.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042729.15Link to Ensembl Protein Viewer:ENSMUSP00000040071.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042729Re-query CCDS DB by Protein ID:ENSMUSP00000040071
Original member Current member NCBI NM_033525.3 NP_277060.2 Accepted alive Link to Nucleotide Sequence:NM_033525.3Link to Protein Sequence:NP_277060.2Re-query CCDS DB by Nucleotide ID:NM_033525Re-query CCDS DB by Protein ID:NP_277060Link to BLAST:NP_277060.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_277060.2 578 Q91V88-2 578 100% 0 0

Chromosomal Locations for CCDS 17846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 132884430 132884513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132885756 132886012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132890764 132890862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132891402 132891488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132904658 132905053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132906347 132906469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132906695 132906829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132908343 132908462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132909896 132910015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132917461 132917553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132931582 132931632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132948047 132948147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132949973 132950043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGCTGTGCTCCTAGCGGCGGTGCTCGCGTCCTCGCTCTACCTGCAGGTGGCTGCCGACTTCGACGGGA
GGTGGCCCAGGCAAATAGTTTCTTCAATCGGCCTATGTCGCTATGGAGGCAGGATTGACTGCTGCTGGGG
CTGGGCCCGCCAGTCCTGGGGACAGTGCCAACCTTTCTACGTCTTAAGGCAGAGACTAGCAAGGATAAGG
TGCCAGCTCAAAGCTGTGTGTCAACCACAGTGCAAACACGGAGAGTGCGTCGGGCCAAACAAGTGCAAAT
GTCACCCTGGATTTGCTGGGAAAACCTGCAACCAAGATTTAAACGAGTGTGGCCTGAAGCCTCGGCCCTG
TAAGCACAGGTGCATGAACACTTTCGGCAGCTACAAGTGCTACTGTCTCAACGGATACATGCTGCTGCCA
GACGGGTCCTGCTCAAGTGCCCTATCGTGTTCCATGGCAAACTGTCAGTATGGCTGTGACGTGGTCAAAG
GACAGGTCCGATGTCAGTGTCCATCCCCTGGCCTGCAGCTAGCTCCCGATGGGAGGACCTGTGTGGATAT
TGATGAATGTGCGACTGGAAGAGTCTCCTGCCCTCGATTTAGGCAGTGTGTCAACACGTTTGGGAGCTAC
ATCTGCAAGTGTCACACTGGTTTCGACCTCATGTACATTGGAGGCAAATATCAGTGCCATGACATCGACG
AGTGCTCTCTTGGACAGCACCAGTGTAGCAGCTATGCCCGGTGTTACAACATACATGGGTCCTACAAGTG
CCAATGTAGAGATGGATACGAGGGGGATGGACTGAACTGTGTGTATATCCCCAAAGTCATGATTGAACCT
TCAGGTCCAATCCATATGCCAGAAAGAAATGGTACAATCTCAAAGGGTGATGGAGGACATGCGAATAGGA
TTCCTGATGCTGGAAGTACAAGGTGGCCCCTGAAGACACCATATATTCCTCCTGTCATTACCAACAGGCC
TACTTCCAAGCCAACAACAAGACCTACACCAAACCCAACACCACAGCCTACTCCACCACCTCCACCACCC
CTCCCGACAGAGCCCAGAACAACTCCACTACCACCAACCCCAGAAAGGCCATCTACCAGACCCACCACTA
TAGCACCTGCTACCAGTACCACTACACGAGTAATTACGGTTGACAACAGGATACAGACGGATCCTCAGAA
ACCCAGAGGAGATGTGTTCATTCCACGGCAGCCGACAAATGACCTGTTTGAGATATTTGAAATCGAAAGA
GGGGTCAGCGCGGATGAGGAAGTAAAGGACGACCCAGGTATTCTCATACACAGCTGCAATTTTGACCATG
GACTCTGTGGATGGATCAGAGAAAAAGATAGTGACTTGCACTGGGAGACAGCCAGGGACCCAGCAGGTGG
ACAGTATCTCACAGTGTCTGCAGCCAAAGCCCCGGGGGGAAAAGCCGCTCGCTTGGTGTTACGTCTCGGC
CACCTCATGCATTCAGGGGACCTGTGCCTGTCCTTTAGGCACAAGGTGACTGGGCTGCACTCGGGCACAC
TGCAGGTGTTTGTGAGGAAACACGGTACCCACGGAGCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTG
GAGGCAAACCCAGATCACCTTGCGAGGGGCTGACGTCAAAAGCGTCATCTTCAAAGGTGAAAAAAGGCGT
GGTCACACGGGGGAGATTGGATTGGATGATGTGAGCTTGAAAAGAGGTCGCTGCTGA

Translation (578 aa):
MAVLLAAVLASSLYLQVAADFDGRWPRQIVSSIGLCRYGGRIDCCWGWARQSWGQCQPFYVLRQRLARIR
CQLKAVCQPQCKHGECVGPNKCKCHPGFAGKTCNQDLNECGLKPRPCKHRCMNTFGSYKCYCLNGYMLLP
DGSCSSALSCSMANCQYGCDVVKGQVRCQCPSPGLQLAPDGRTCVDIDECATGRVSCPRFRQCVNTFGSY
ICKCHTGFDLMYIGGKYQCHDIDECSLGQHQCSSYARCYNIHGSYKCQCRDGYEGDGLNCVYIPKVMIEP
SGPIHMPERNGTISKGDGGHANRIPDAGSTRWPLKTPYIPPVITNRPTSKPTTRPTPNPTPQPTPPPPPP
LPTEPRTTPLPPTPERPSTRPTTIAPATSTTTRVITVDNRIQTDPQKPRGDVFIPRQPTNDLFEIFEIER
GVSADEEVKDDPGILIHSCNFDHGLCGWIREKDSDLHWETARDPAGGQYLTVSAAKAPGGKAARLVLRLG
HLMHSGDLCLSFRHKVTGLHSGTLQVFVRKHGTHGAALWGRNGGHGWRQTQITLRGADVKSVIFKGEKRR
GHTGEIGLDDVSLKRGRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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