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Report for CCDS38673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38673.1 Public Mus musculus 3 Nexn 23 108 98 CCDS HistoryNCBI Gene:68810Re-query CCDS DB by CCDS ID:38673.1Re-query CCDS DB by GeneID:68810See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38673.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046045.12 ENSMUSP00000037120.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046045.12Link to Ensembl Protein Viewer:ENSMUSP00000037120.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046045Re-query CCDS DB by Protein ID:ENSMUSP00000037120
Original member NCBI NM_199465.3 NP_955759.2 Updated not alive Link to Nucleotide Sequence:NM_199465.3Link to Protein Sequence:NP_955759.2Re-query CCDS DB by Nucleotide ID:NM_199465Re-query CCDS DB by Protein ID:NP_955759
Current member NCBI NM_199465.4 NP_955759.2 Accepted alive Link to Nucleotide Sequence:NM_199465.4Link to Protein Sequence:NP_955759.2Re-query CCDS DB by Nucleotide ID:NM_199465Re-query CCDS DB by Protein ID:NP_955759Link to BLAST:NP_955759.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955759.2 607 Q7TPW1 607 100% 0 0

Chromosomal Locations for CCDS 38673.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152237566 152237579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152237665 152238022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152238247 152238432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152242659 152242880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152243826 152244023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152247086 152247274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152247933 152248103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152248180 152248368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152249660 152249701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152252808 152252956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152253051 152253129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152255285 152255311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGAATGACGTTTCGCAAAAGGCAGAGATTAAAGAAATGCTTGCTTCTGATGATGAGGAAGAAAGTTCTC
CTAAAATAGAAAAGGCTTATGTCCCAAAGCTAACAGGGACAGTTAAAGGTAAATTCGATGAAATGGAGAA
ACACAGACAGGAAGAACAAAGAAAGAGAACAGAAGAAGAAAGAAAACGCAGAATTGAGCAGGATCTGTTA
GAAAAGAGGAAAATACAGCGCGAATTAGCAAAAAGAGCGGAGCAGATTGAGGACATAAACAATACGGGAA
CCGAGTCCGCATCAGAGGAAGGAGATGACTCACTACTTATAACAGTGGTACCTGCCAAATCATACAAAAC
ACCTGGAAAAACAAAGGATCCTGAGGACCTGGACAGAGAAGAAGGAAATGGGAGAACCAACCATGAAGAA
GATAAAATGAGATATGAAGAAGAGTGCCGAGTTCTCAAAGAAGCAAAATGTCTTTCATTAGTCATGGATG
ATGAAACAGAGGCCAAAAAAGAATCACATTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACG
ACAAAGACAAGAAAATCGCAAGAAGCAAGCGGAAGAGGAAGCGAGACGACGCTTAGAAGAAGAGAGACGT
TCCTTTGAGGAGGCGAGAAGGCACATGGTAAATGAGGAGGATGAAAACCAAGATAGAGAAACAGTTTTTA
AAGAGTACCGCCCAGGAAAACTCAAACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGACGAAAA
ACGAAAAGCAGAGGAGGAGGCCCGAAGGAGAATAGAGGAAGAGAAGGCGGCATTTGCTGAAGCAAGGAGA
AGCATGGTATTAGATGATGATTCCCCAGAGATTTATAAAACAGTGTCTCAAGAATCTCTTACTCCTGGAA
AACTAGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAAGA
ACGCAGGCATAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAAAGGAAGAA
GAAGAAAATGAAAGCTTTGGGTTGAGTAGAGAATATGAAGAATTAATTAAATTAAAAAGGAGTGGCTCAA
TTCAAGCTAAAAATCTAAAAAGCAAGTTTGAAAAAATTGGACAATTGTCTGAAAAAGAAGTACAGAAAAA
GATAGAAGAAGAGCGAGCAAAAAGGCGAGCAATTGACCTTGAAATCAAAGAGCGAGAAGCAGAAAACTTC
CATGAGGACGATGATGTTGATGTAAGGCCTGCAAAGAAGAGTGAGTCTCCTTTTACTCATAAGGTGAACA
TGAAAGCCAGGTTTGAACAAATGGCAAAGGCAAGAGAAGAGGAAGAACAAAGAAGAATTGAAGAACAAAA
GTTACTACGAATGCAGTTTGAACAGAAAGAAATCGATGCGGCATTACAGAAGAAAAGAGAAGATGAGGAG
GAAGAAGAAGGTAGCATTGTTAATGGCTCCACTACTGAAGATGAAGAGCAAACCAGATCAGGAGCTCCAT
GGTTCAAAAAGCCTTTAAGAAATACCTCAGTTGTAGACAGTGAGCCAGTCAGATTTACTGTTAAAGTAAC
AGGAGAACCCAAGCCGGAAATTACATGGTGGTTTGAAGGAGAAATACTGCAGGATGGAGAAGACTATCAG
TACATCGAAAGAGGTGAAACTTACTGCCTGTATTTACCGGAAACCTTCCCAGAAGATGGAGGAGAGTACA
TGTGTAAGGCAGTCAACAATAAAGGCTCAGCAGCGAGCACCTGCATTCTTACCATTGAAATGGATGACTA
CTAG

Translation (607 aa):
MNDVSQKAEIKEMLASDDEEESSPKIEKAYVPKLTGTVKGKFDEMEKHRQEEQRKRTEEERKRRIEQDLL
EKRKIQRELAKRAEQIEDINNTGTESASEEGDDSLLITVVPAKSYKTPGKTKDPEDLDREEGNGRTNHEE
DKMRYEEECRVLKEAKCLSLVMDDETEAKKESHFPGKLKSTFEELERQRQENRKKQAEEEARRRLEEERR
SFEEARRHMVNEEDENQDRETVFKEYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKAAFAEARR
SMVLDDDSPEIYKTVSQESLTPGKLEINFEQLLRQKMEEERRRTEEERRHKLEMEKQEFEQLRQEMGKEE
EENESFGLSREYEELIKLKRSGSIQAKNLKSKFEKIGQLSEKEVQKKIEEERAKRRAIDLEIKEREAENF
HEDDDVDVRPAKKSESPFTHKVNMKARFEQMAKAREEEEQRRIEEQKLLRMQFEQKEIDAALQKKREDEE
EEEGSIVNGSTTEDEEQTRSGAPWFKKPLRNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQ
YIERGETYCLYLPETFPEDGGEYMCKAVNNKGSAASTCILTIEMDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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