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Report for CCDS89710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89710.1 Public Mus musculus 3 Nexn 23 108 98 CCDS HistoryNCBI Gene:68810Re-query CCDS DB by CCDS ID:89710.1Re-query CCDS DB by GeneID:68810See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89710.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199423.4 ENSMUSP00000142936.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199423.4Link to Ensembl Protein Viewer:ENSMUSP00000142936.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199423Re-query CCDS DB by Protein ID:ENSMUSP00000142936
Original member NCBI NM_001357206.1 NP_001344135.1 Updated not alive Link to Nucleotide Sequence:NM_001357206.1Link to Protein Sequence:NP_001344135.1Re-query CCDS DB by Nucleotide ID:NM_001357206Re-query CCDS DB by Protein ID:NP_001344135
Current member NCBI NM_001357206.2 NP_001344135.1 Accepted alive Link to Nucleotide Sequence:NM_001357206.2Link to Protein Sequence:NP_001344135.1Re-query CCDS DB by Nucleotide ID:NM_001357206Re-query CCDS DB by Protein ID:NP_001344135Link to BLAST:NP_001344135.1

Chromosomal Locations for CCDS 89710.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152237566 152237579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152237665 152238022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152238247 152238432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152242659 152242880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152243826 152244023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152247086 152247274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152247933 152248103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152248180 152248368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152249660 152249701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152252808 152252956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152253051 152253129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152253612 152253803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152255285 152255311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGAATGACGTTTCGCAAAAGGCAGAGATTCTGCTTTCCTCATGTAAACCTGTCCCTAAGTCCTATGTGC
CAAAGCTTGGCAAGGGAGATGTAAAGGACAAGTTTGAAGCCATGCAGAGGGCCAGGGAAGAAAGAAATCA
AAGGCGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAGAGAGAATGGAACAGGAGA
AAGCAGGAGATTAAAGAAATGCTTGCTTCTGATGATGAGGAAGAAAGTTCTCCTAAAATAGAAAAGGCTT
ATGTCCCAAAGCTAACAGGGACAGTTAAAGGTAAATTCGATGAAATGGAGAAACACAGACAGGAAGAACA
AAGAAAGAGAACAGAAGAAGAAAGAAAACGCAGAATTGAGCAGGATCTGTTAGAAAAGAGGAAAATACAG
CGCGAATTAGCAAAAAGAGCGGAGCAGATTGAGGACATAAACAATACGGGAACCGAGTCCGCATCAGAGG
AAGGAGATGACTCACTACTTATAACAGTGGTACCTGCCAAATCATACAAAACACCTGGAAAAACAAAGGA
TCCTGAGGACCTGGACAGAGAAGAAGGAAATGGGAGAACCAACCATGAAGAAGATAAAATGAGATATGAA
GAAGAGTGCCGAGTTCTCAAAGAAGCAAAATGTCTTTCATTAGTCATGGATGATGAAACAGAGGCCAAAA
AAGAATCACATTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAATCG
CAAGAAGCAAGCGGAAGAGGAAGCGAGACGACGCTTAGAAGAAGAGAGACGTTCCTTTGAGGAGGCGAGA
AGGCACATGGTAAATGAGGAGGATGAAAACCAAGATAGAGAAACAGTTTTTAAAGAGTACCGCCCAGGAA
AACTCAAACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGACGAAAAACGAAAAGCAGAGGAGGA
GGCCCGAAGGAGAATAGAGGAAGAGAAGGCGGCATTTGCTGAAGCAAGGAGAAGCATGGTATTAGATGAT
GATTCCCCAGAGATTTATAAAACAGTGTCTCAAGAATCTCTTACTCCTGGAAAACTAGAAATTAATTTTG
AACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAAGAACGCAGGCATAAACTAGA
AATGGAGAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAAAGGAAGAAGAAGAAAATGAAAGCTTT
GGGTTGAGTAGAGAATATGAAGAATTAATTAAATTAAAAAGGAGTGGCTCAATTCAAGCTAAAAATCTAA
AAAGCAAGTTTGAAAAAATTGGACAATTGTCTGAAAAAGAAGTACAGAAAAAGATAGAAGAAGAGCGAGC
AAAAAGGCGAGCAATTGACCTTGAAATCAAAGAGCGAGAAGCAGAAAACTTCCATGAGGACGATGATGTT
GATGTAAGGCCTGCAAAGAAGAGTGAGTCTCCTTTTACTCATAAGGTGAACATGAAAGCCAGGTTTGAAC
AAATGGCAAAGGCAAGAGAAGAGGAAGAACAAAGAAGAATTGAAGAACAAAAGTTACTACGAATGCAGTT
TGAACAGAAAGAAATCGATGCGGCATTACAGAAGAAAAGAGAAGATGAGGAGGAAGAAGAAGGTAGCATT
GTTAATGGCTCCACTACTGAAGATGAAGAGCAAACCAGATCAGGAGCTCCATGGTTCAAAAAGCCTTTAA
GAAATACCTCAGTTGTAGACAGTGAGCCAGTCAGATTTACTGTTAAAGTAACAGGAGAACCCAAGCCGGA
AATTACATGGTGGTTTGAAGGAGAAATACTGCAGGATGGAGAAGACTATCAGTACATCGAAAGAGGTGAA
ACTTACTGCCTGTATTTACCGGAAACCTTCCCAGAAGATGGAGGAGAGTACATGTGTAAGGCAGTCAACA
ATAAAGGCTCAGCAGCGAGCACCTGCATTCTTACCATTGAAATGGATGACTACTAG

Translation (671 aa):
MNDVSQKAEILLSSCKPVPKSYVPKLGKGDVKDKFEAMQRAREERNQRRSRDEKQRRKEQYIREREWNRR
KQEIKEMLASDDEEESSPKIEKAYVPKLTGTVKGKFDEMEKHRQEEQRKRTEEERKRRIEQDLLEKRKIQ
RELAKRAEQIEDINNTGTESASEEGDDSLLITVVPAKSYKTPGKTKDPEDLDREEGNGRTNHEEDKMRYE
EECRVLKEAKCLSLVMDDETEAKKESHFPGKLKSTFEELERQRQENRKKQAEEEARRRLEEERRSFEEAR
RHMVNEEDENQDRETVFKEYRPGKLKLSFEEIERQRREDEKRKAEEEARRRIEEEKAAFAEARRSMVLDD
DSPEIYKTVSQESLTPGKLEINFEQLLRQKMEEERRRTEEERRHKLEMEKQEFEQLRQEMGKEEEENESF
GLSREYEELIKLKRSGSIQAKNLKSKFEKIGQLSEKEVQKKIEEERAKRRAIDLEIKEREAENFHEDDDV
DVRPAKKSESPFTHKVNMKARFEQMAKAREEEEQRRIEEQKLLRMQFEQKEIDAALQKKREDEEEEEGSI
VNGSTTEDEEQTRSGAPWFKKPLRNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQYIERGE
TYCLYLPETFPEDGGEYMCKAVNNKGSAASTCILTIEMDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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