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Report for CCDS18404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18404.1 Public Mus musculus 4 Sgip1 23 108 98 CCDS HistoryNCBI Gene:73094Re-query CCDS DB by CCDS ID:18404.1Re-query CCDS DB by GeneID:73094See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080728.12 ENSMUSP00000079553.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080728.12Link to Ensembl Protein Viewer:ENSMUSP00000079553.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080728Re-query CCDS DB by Protein ID:ENSMUSP00000079553
Original member Current member NCBI NM_144906.2 NP_659155.1 Accepted alive Link to Nucleotide Sequence:NM_144906.2Link to Protein Sequence:NP_659155.1Re-query CCDS DB by Nucleotide ID:NM_144906Re-query CCDS DB by Protein ID:NP_659155Link to BLAST:NP_659155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659155.1 806 Q8VD37-1 806 100% 0 0

Chromosomal Locations for CCDS 18404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102760556 102760565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102852883 102852946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102860770 102860794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102863662 102863733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102867640 102867696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102869754 102869808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102870549 102870724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102900526 102900537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102905565 102905576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102908808 102908832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102909738 102909789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102911459 102911544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102915059 102915151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102918781 102918855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102921022 102921519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102927461 102927585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102928786 102928912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102956099 102956210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102962375 102962530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102964541 102964673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102966149 102966351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102967611 102967675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102968171 102968335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102970057 102970079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2421 nt):
ATGATGGAAGGACTGAAAAAACGTACAAGGAAGGCCTTTGGAATACGGAAGAAAGAAAAAGACACTGACT
CTACAGGCTCGCCAGACCGAGATGGAATGCAGCCCAGCCCACACGAGCCACCCTACCATAGCAAAGCAGA
GTGTGCGCGGGAAGGAGGGAAGAAAGCTTCGAAGAAAAGCAATGGGGCACCAAATGGATTTTATGCAGAA
ATCGATTGGGAAAGATATAACTCACCTGAGCTAGATGAAGAAGGTTACAGCATCAGACCTGAGGAACCAG
GCTCTACCAAAGGAAAGCACTTTTATTCCTCAAGTGAATCTGAAGAGGAAGAAGAGTCGCACAAGAAATT
CAACATCAAGATTAAACCCTTGCAATCTAAGGACGTCCTGAAGAATGCAGCGACGGTAGATGAGCTGAAG
GCTTCAATAGGCAACATCGCACTTTCCCCTTCGCCTGTGAGGAAAAGTCCGAGGCGCAGCCCGGGTGCAA
TTAAAAGGAACTTATCCAGTGAAGAAGTTGCAAGACCCAGGCGTTCCACCCCAACTCCAGAACTTACAAG
CAAGAAGCCTCTGGATGACACTCTGGCCCTTGCTCCCCTCTTTGGTCCACCATTAGAGTCAGCTTTTGAT
GAGCAGAAGACGGAAGTTCTTTTAGATCAGCCTGAGATATGGGGTTCAGGCCAACCGATGAACCCAAGTA
CGGAGTCGCCAGAGCTAGCAAGACCTTTCCCCACTGGAACACCTCCACCTCTGCCTCCAAAAACTGTACC
AGCCACTCCGCCTCGAACAGGCTCCCCCTTAACAGTTGCAACAGGAAATGACCAGGCAGCCACAGAGGCC
AAAATTGAGAAACTACCATCCATCAGTGACCTGGACAGCATTTTTGGGCCAGTGTTGTCGCCCAAGTCTG
TTGCTGTTAATACTGAAGAGAAGTGGGTCCATTTTTCTGATGCATCCCCGGAACATGTTACTCCAGAGTT
GACTCCAAGGGAACAGGTGGTGACCCCACCAGCTGCATCAGACATCCCAGCTGACTCCCCAGCTCCAGCC
CCACCTGGCCCCACAGGCTCCGCAGGTCCCCCAGGGCCTCCTGGTCCTCGCCATGTACCATCTCCGCTCA
ATTTAGAAGAAGTCCAGAAGAAAGTTGCTGAGCAGACCTTCATTAAAGATGATTACTTAGAAACACTCTC
ATCTCCTAAAGAGTGTGGGTTGGGACAGAGAGCAACTCCACCTCCCCCACCACCACCCACCTACAGGACT
GTGGTCTCGTCCCCCGGACCTGGCTCGGGCAGTGGTACGGGGACCACCAGTGGTGCGTCTTCTCCTGCTC
GACCAGCCACCCCCTTAGTTCCTTGCAGCACCACTCCGCCTCCACCTCCTCCCCGGCCTCCATCCCGGCC
AAAGCTACCTCCAGGAAAGCCTGGAGTTGGAGATGTGTCCAGACCTTTTAGCCCACCCATACACTCCTCC
AGCCCTCCTCCGATAGCACCCTTAGCCCGGGCTGAAAGCACTTCTTCAATATCGTCAACTAACTCACTGA
GCGCAGCCACCACTCCCACAGTTGGTTCCTCCCGGGGGCCCAGTCCCCTAACTATGGGGGCCCAGGACAC
CCTCCCGGTCGCAGCAGCTTTCACAGAAACTGTCAACGCCTACTTCAAAGGAGCAGATCCAAGCAAGTGC
ATTGTTAAGATCACGGGAGAAATGGTGTTGTCCTTCCCTGCTGGTATCACCAGACACTTTGCCAACAACC
CATCCCCAGCAGCTCTGACTTTCCGGGTGGTAAATTCCAGCAGGTTAGAGCACGTCCTGCCGAACCCCCA
ACTTCTCTGCTGTGATAATACACAAAATGATGCCAATACCAAGGAATTCTGGGTAAACATGCCAAATTTG
ATGACTCACCTAAAGAAAGTCTCTGAACAAAAACCCCAGGCTACATACTATAATGTGGACATGCTCAAAT
ATCAGGTGTCTGCCCAGGGCATTCAGTCCACACCTCTGAACTTGGCGGTGAACTGGCGCTGTGAGCCTGC
GAGCACTGACCTGCGCATAGACTATAAGTACAACACGGATGCCATGTCCACTGCAGTGGCCCTCAACAAC
GTGCAGTTCCTGGTCCCCATAGACGGAGGAGTGACCAAGCTTCAGGCTGTGCTTCCTCCAGCAGTCTGGA
ATGCTGAACAACAAAGAATATTATGGAAGATTCCCGATATCTCCCAGAAGTCAGAAAATGGAGGCGTAGG
TTCTTTACTGGCGAGATTTCAGTTATCCGAAGGCCCGAGCAAACCTTCCCCGCTGGTTGTGCAGTTCACG
AGTGAAGGAAGTACTCTCTCTGGCTGTGACATTGAACTTGTTGGAGCAGGCTACCGGTTTTCACTCATTA
AGAAGAGGTTTGCTGCAGGAAAGTACTTGGCAGATAACTAA

Translation (806 aa):
MMEGLKKRTRKAFGIRKKEKDTDSTGSPDRDGMQPSPHEPPYHSKAECAREGGKKASKKSNGAPNGFYAE
IDWERYNSPELDEEGYSIRPEEPGSTKGKHFYSSSESEEEEESHKKFNIKIKPLQSKDVLKNAATVDELK
ASIGNIALSPSPVRKSPRRSPGAIKRNLSSEEVARPRRSTPTPELTSKKPLDDTLALAPLFGPPLESAFD
EQKTEVLLDQPEIWGSGQPMNPSTESPELARPFPTGTPPPLPPKTVPATPPRTGSPLTVATGNDQAATEA
KIEKLPSISDLDSIFGPVLSPKSVAVNTEEKWVHFSDASPEHVTPELTPREQVVTPPAASDIPADSPAPA
PPGPTGSAGPPGPPGPRHVPSPLNLEEVQKKVAEQTFIKDDYLETLSSPKECGLGQRATPPPPPPPTYRT
VVSSPGPGSGSGTGTTSGASSPARPATPLVPCSTTPPPPPPRPPSRPKLPPGKPGVGDVSRPFSPPIHSS
SPPPIAPLARAESTSSISSTNSLSAATTPTVGSSRGPSPLTMGAQDTLPVAAAFTETVNAYFKGADPSKC
IVKITGEMVLSFPAGITRHFANNPSPAALTFRVVNSSRLEHVLPNPQLLCCDNTQNDANTKEFWVNMPNL
MTHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTPLNLAVNWRCEPASTDLRIDYKYNTDAMSTAVALNN
VQFLVPIDGGVTKLQAVLPPAVWNAEQQRILWKIPDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFT
SEGSTLSGCDIELVGAGYRFSLIKKRFAAGKYLADN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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