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Report for CCDS18558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18558.1 Public Mus musculus 4 Or13p8 23 108 98 CCDS HistoryNCBI Gene:258301Re-query CCDS DB by CCDS ID:18558.1Re-query CCDS DB by GeneID:258301See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18558.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094834.5 ENSMUSP00000092430.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094834.5Link to Ensembl Protein Viewer:ENSMUSP00000092430.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094834Re-query CCDS DB by Protein ID:ENSMUSP00000092430
Original member Current member EBI ENSMUST00000216242.2 ENSMUSP00000149224.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216242.2Link to Ensembl Protein Viewer:ENSMUSP00000149224.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000216242Re-query CCDS DB by Protein ID:ENSMUSP00000149224
Original member Current member EBI ENSMUST00000217334.2 ENSMUSP00000149563.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217334.2Link to Ensembl Protein Viewer:ENSMUSP00000149563.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000217334Re-query CCDS DB by Protein ID:ENSMUSP00000149563
Original member Current member EBI ENSMUST00000213436.2 ENSMUSP00000150483.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213436.2Link to Ensembl Protein Viewer:ENSMUSP00000150483.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000213436Re-query CCDS DB by Protein ID:ENSMUSP00000150483
Original member Current member NCBI NM_146304.2 NP_666416.2 Accepted alive Link to Nucleotide Sequence:NM_146304.2Link to Protein Sequence:NP_666416.2Re-query CCDS DB by Nucleotide ID:NM_146304Re-query CCDS DB by Protein ID:NP_666416Link to BLAST:NP_666416.2

Chromosomal Locations for CCDS 18558.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118726249 118727196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCACAGTCGAGGCTGGAGAAATCACAGCTCTGTAACTGAGTTCATCCTCTTGGGCTTCTCCAGAAACC
CCAGGACCAATTGGATCCTTTTTTTTCTCTTCCTCTTCCTCTACTTATTTACAGTCCTGGGTAATGGACT
CATTGTTACCCTGATTAGAATAGATGCTCGTCTCCACACACCCATGTATTTCTTTCTCAGCATCCTCTCC
CTCCTGGATCTGAGTTATGCCACCACGACCGTGCCCCAGATGTTGGCTCATCTAGTAAGCAAGACTAAGA
CTATCTCTTACACTGGGTGTGTGATTCAGATGTATATTTTCTTGACACTAGGCATCACTGAGACCTGGAT
TTTTGCAGCTATGGCCTATGACAGATATGTTGCTATATGTTATCCACTCCACTATGGAGTCAAGATGAGC
CAAACCCTATGCATAGCCCTGGTGGTCAGCTCTGCCCTTTGTGGCCTCATCTGTGCCCTTGTCTACACAG
TCTTTGCAATGAATCTTCCTTACTGTGGCCCCAATGAGATCAACCACTTCTTTTGTGAAATCCCTGCTGT
CTTGAAGTTGGCCTGTGCAGACACATCCCTCAATGACCAAGTAGACTTCATCCTGGGCTTCATCTTGCTT
CTGATCCCATTATCCCTCATTTTGGCCTCATATGTTCGGATCTTCATAGCCATTCTAAGGATCTGCTCTA
CCCAAGGACGGATGAAGGCCTTCTCCACCTGTGCTTCACACATCACTGTGGTCACCATGTTCTGTGTTCC
ATGCATGGTCATGTACATGAGACCTGGCTCTGAAGCCTCCCCAGAAGATGATAAGAAGCTGGCCTTGTTC
TATAATGTCATTTCTGCCTTCCTTAACCCCATTATTTACAGTCTCCGGAACAAGGATGTGAAGAAGGCTT
TCTTCAAGTTAATTGGAAGGGGTGAGGACACCCAGTAG

Translation (315 aa):
MHSRGWRNHSSVTEFILLGFSRNPRTNWILFFLFLFLYLFTVLGNGLIVTLIRIDARLHTPMYFFLSILS
LLDLSYATTTVPQMLAHLVSKTKTISYTGCVIQMYIFLTLGITETWIFAAMAYDRYVAICYPLHYGVKMS
QTLCIALVVSSALCGLICALVYTVFAMNLPYCGPNEINHFFCEIPAVLKLACADTSLNDQVDFILGFILL
LIPLSLILASYVRIFIAILRICSTQGRMKAFSTCASHITVVTMFCVPCMVMYMRPGSEASPEDDKKLALF
YNVISAFLNPIIYSLRNKDVKKAFFKLIGRGEDTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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