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Report for CCDS18640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18640.1 Public Mus musculus 4 Csf3r 23 108 98 CCDS HistoryNCBI Gene:12986Re-query CCDS DB by CCDS ID:18640.1Re-query CCDS DB by GeneID:12986See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030673.6 ENSMUSP00000030673.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030673.6Link to Ensembl Protein Viewer:ENSMUSP00000030673.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030673Re-query CCDS DB by Protein ID:ENSMUSP00000030673
Original member Current member EBI ENSMUST00000106162.7 ENSMUSP00000101768.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106162.7Link to Ensembl Protein Viewer:ENSMUSP00000101768.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106162Re-query CCDS DB by Protein ID:ENSMUSP00000101768
Original member NCBI NM_007782.3 NP_031808.2 Updated not alive Link to Nucleotide Sequence:NM_007782.3Link to Protein Sequence:NP_031808.2Re-query CCDS DB by Nucleotide ID:NM_007782Re-query CCDS DB by Protein ID:NP_031808
Current member NCBI NM_007782.4 NP_031808.2 Accepted alive Link to Nucleotide Sequence:NM_007782.4Link to Protein Sequence:NP_031808.2Re-query CCDS DB by Nucleotide ID:NM_007782Re-query CCDS DB by Protein ID:NP_031808Link to BLAST:NP_031808.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031808.2 837 P40223 837 100% 0 0

Chromosomal Locations for CCDS 18640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126027337 126027400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126029763 126030062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126031798 126031921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126032112 126032299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126034170 126034339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126034422 126034575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126035299 126035378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126035766 126035979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126037520 126037708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126038028 126038129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126039506 126039652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126039762 126039896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126042660 126042750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126042904 126042985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126043365 126043838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGGTAGGGCTGGGAGCCTGCACCCTGACTGGAGTTACCCTGATCTTCTTGCTACTCCCCAGAAGTCTGG
AGAGCTGTGGACACATCGAGATTTCACCCCCTGTTGTCCGCCTGGGGGACCCTGTCCTGGCCTCTTGCAC
CATCAGCCCAAACTGCAGCAAACTGGACCAACAGGCAAAGATCTTATGGAGACTGCAAGATGAGCCCATC
CAACCTGGGGACAGACAGCATCATCTGCCTGATGGGACCCAAGAGTCCCTCATCACTCTGCCTCACTTGA
ACTACACCCAGGCCTTCCTCTTCTGCTTAGTGCCATGGGAAGACAGCGTCCAACTCCTGGATCAAGCTGA
GCTTCACGCAGGCTATCCCCCTGCCAGCCCCTCAAACCTATCCTGCCTCATGCACCTCACCACCAACAGC
CTGGTCTGCCAGTGGGAGCCAGGTCCTGAGACCCACCTGCCCACCAGCTTCATCCTAAAGAGCTTCAGGA
GCCGCGCCGACTGTCAGTACCAAGGGGACACCATCCCGGATTGTGTGGCAAAGAAGAGGCAGAACAACTG
CTCCATCCCCCGAAAAAACTTGCTCCTGTACCAGTATATGGCCATCTGGGTGCAAGCAGAGAATATGCTA
GGGTCCAGCGAGTCCCCAAAGCTGTGCCTCGACCCCATGGATGTTGTGAAATTGGAGCCTCCCATGCTGC
AGGCCCTGGACATTGGCCCTGATGTAGTCTCTCACCAGCCTGGCTGCCTGTGGCTGAGCTGGAAGCCATG
GAAGCCCAGTGAGTACATGGAACAGGAGTGTGAACTTCGCTACCAGCCACAGCTCAAAGGAGCCAACTGG
ACTCTGGTGTTCCACCTGCCTTCCAGCAAGGACCAGTTTGAGCTCTGCGGGCTCCATCAGGCCCCAGTCT
ACACCCTACAGATGCGATGCATTCGCTCATCTCTGCCTGGATTCTGGAGCCCCTGGAGCCCCGGCCTGCA
GCTGAGGCCTACCATGAAGGCCCCCACCATCAGACTGGACACGTGGTGTCAGAAGAAGCAACTAGATCCA
GGGACAGTGAGTGTGCAGCTGTTCTGGAAGCCAACGCCCCTGCAGGAAGACAGTGGACAGATCCAGGGCT
ACCTGCTGTCCTGGAGTTCCCCAGATCATCAAGGGCAGGACATACACCTTTGCAACACCACGCAGCTCAG
CTGTATCTTCCTCCTGCCCTCAGAGGCCCAGAACGTGACCCTTGTGGCCTACAACAAAGCAGGGACCTCT
TCACCTACTACAGTGGTTTTCCTGGAGAACGAAGGTCCAGCTGTGACCGGACTCCATGCCATGGCCCAAG
ACCTTAACACCATCTGGGTAGACTGGGAAGCCCCCAGCCTTCTGCCTCAGGGCTATCTCATTGAGTGGGA
AATGAGTTCTCCCAGCTACAATAACAGCTATAAGTCCTGGATGATAGAACCTAACGGGAACATCACTGGA
ATTCTGTTAAAGGACAACATAAATCCCTTTCAGCTCTACAGAATTACAGTGGCTCCCCTGTACCCAGGCA
TCGTGGGACCTCCTGTAAATGTCTACACCTTCGCTGGAGAGAGAGCTCCTCCTCATGCTCCAGCGCTGCA
TCTAAAGCATGTTGGCACAACCTGGGCACAGCTGGAGTGGGTACCTGAGGCCCCTAGGCTGGGGATGATA
CCCCTCACCCACTACACCATCTTCTGGGCCGATGCTGGGGACCACTCCTTCTCCGTCACCCTGAACATCT
CCCTCCATGACTTTGTCCTGAAGCACCTGGAGCCCGCCAGTTTGTATCATGTCTACCTCATGGCCACCAG
TCGGGCAGGGTCCACCAACAGTACAGGCCTTACCCTGAGGACCCTAGATCCATCTGACTTAAACATTTTC
CTGGGCATACTTTGCTTAGTACTCTTGTCCACTACCTGTGTAGTGACCTGGCTCTGCTGCAAACGCAGAG
GAAAGACTTCCTTCTGGTCAGATGTGCCAGACCCAGCCCACAGTAGCCTGAGCTCCTGGTTGCCCACCAT
CATGACAGAGGAAACCTTCCAGTTACCCAGCTTCTGGGACTCCAGCGTGCCATCAATCACCAAGATCACT
GAACTGGAGGAAGACAAGAAACCGACCCACTGGGATTCCGAAAGCTCTGGGAATGGTAGCCTTCCAGCCC
TGGTTCAGGCCTATGTGCTCCAAGGAGATCCAAGAGAAATTTCCAACCAGTCCCAGCCTCCCTCTCGCAC
TGGTGACCAGGTCCTCTATGGTCAGGTGCTTGAGAGCCCCACCAGCCCAGGAGTAATGCAGTACATTCGC
TCTGACTCCACTCAGCCCCTCTTGGGGGGCCCCACCCCTAGCCCTAAATCTTATGAAAACATCTGGTTCC
ATTCAAGACCCCAGGAGACCTTTGTGCCCCAACCTCCAAACCAGGAAGATGACTGTGTCTTTGGGCCTCC
ATTTGATTTTCCCCTCTTTCAGGGGCTCCAGGTCCATGGAGTTGAAGAACAAGGGGGTTTCTAG

Translation (837 aa):
MVGLGACTLTGVTLIFLLLPRSLESCGHIEISPPVVRLGDPVLASCTISPNCSKLDQQAKILWRLQDEPI
QPGDRQHHLPDGTQESLITLPHLNYTQAFLFCLVPWEDSVQLLDQAELHAGYPPASPSNLSCLMHLTTNS
LVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMAIWVQAENML
GSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANW
TLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMKAPTIRLDTWCQKKQLDP
GTVSVQLFWKPTPLQEDSGQIQGYLLSWSSPDHQGQDIHLCNTTQLSCIFLLPSEAQNVTLVAYNKAGTS
SPTTVVFLENEGPAVTGLHAMAQDLNTIWVDWEAPSLLPQGYLIEWEMSSPSYNNSYKSWMIEPNGNITG
ILLKDNINPFQLYRITVAPLYPGIVGPPVNVYTFAGERAPPHAPALHLKHVGTTWAQLEWVPEAPRLGMI
PLTHYTIFWADAGDHSFSVTLNISLHDFVLKHLEPASLYHVYLMATSRAGSTNSTGLTLRTLDPSDLNIF
LGILCLVLLSTTCVVTWLCCKRRGKTSFWSDVPDPAHSSLSSWLPTIMTEETFQLPSFWDSSVPSITKIT
ELEEDKKPTHWDSESSGNGSLPALVQAYVLQGDPREISNQSQPPSRTGDQVLYGQVLESPTSPGVMQYIR
SDSTQPLLGGPTPSPKSYENIWFHSRPQETFVPQPPNQEDDCVFGPPFDFPLFQGLQVHGVEEQGGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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