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Report for CCDS39218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39218.1 Public Mus musculus 5 Sgsm1 23 108 98 CCDS HistoryNCBI Gene:52850Re-query CCDS DB by CCDS ID:39218.1Re-query CCDS DB by GeneID:52850See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048112.12 ENSMUSP00000046544.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048112.12Link to Ensembl Protein Viewer:ENSMUSP00000046544.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048112Re-query CCDS DB by Protein ID:ENSMUSP00000046544
Original member Current member NCBI NM_172718.3 NP_766306.2 Accepted alive Link to Nucleotide Sequence:NM_172718.3Link to Protein Sequence:NP_766306.2Re-query CCDS DB by Nucleotide ID:NM_172718Re-query CCDS DB by Protein ID:NP_766306Link to BLAST:NP_766306.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766306.2 1093 Q8BPQ7-1 1093 99.817% 0 2

Chromosomal Locations for CCDS 39218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113245005 113245093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113250873 113251040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113252998 113253094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113255252 113255361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113258791 113258873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113260049 113260173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113263249 113263836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113265879 113265947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113266287 113266469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113268701 113268829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113273579 113273724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113274292 113274356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113276034 113276172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113279133 113279265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113279457 113279620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113280327 113280394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113282592 113282716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113284980 113285111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113285279 113285424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113285627 113285694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113286775 113286927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113287225 113287387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113288824 113288899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113310548 113310591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113310674 113310692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3282 nt):
ATGGCTTCGGTCCCTGCGGAGGCCGAGACCCGCCAGAGGCTGCTGCGCACTGTGAAGAAGGAGGTGAAGC
AGATCATGGAAGAAGCCGTTACCAGAAAGTTCGTCCACGAGGACAGCAGCCACATCATCTCCTTCTGTGC
GGCCGTGGAGGCCTGCGTGCTGCACGGGCTGCGGCGGAGGGCGGCCGGCTTCCTGCGAAGCAACAAGATC
GCGGCGCTCTTCATGAAGGTGGGCAAAGGCTTCCCTCCGGCCGAGGAGCTGAGCCGCAAGGTCCAGGAAC
TGGAGCAACTCATTGAGAGCGCGCGAAACCAGATCCAGGGCCTGCAAGAGAACGTGCGGAAGCTGCCGAA
GCTGCCTAACCTGTCCCCGCTGGCCATCAAGCACCTGTGGATCCGCACCGCCCTGTTCGAGAGGGTCCTG
GACAAAATCGTCCACTACCTGGTGGAAAACAGCAGTAAATACTACGAGAAGGAGGCACTCTTGATGGACC
CGGTGGACGGACCCATCCTGGCCTCTTTGTTGGTGGGGCCATGTGCCCTGGAGTATACCAAGATGAAGAC
TGCAGATCACTTCTGGACTGACCCCTCAGCCGACGAGCTGGTCCAGAGACACCGGATCCACAGCTCACAT
CTGAGACAGGACTCGCCCACCAAGCGGCCAGCGCTCTGTATCCAGAAGAGGCATTCCAGTGGCAGCATGG
ACGACCGGCCATCTATCTCTGCCCGGGACTATGTAGAATCTCTGCACCAGAACTCCAGGGCCACCCTGCT
CTATGGAAAGAACAATGTTCTGGTTCAGCCAAGGGATGACATGGAGGCCGTGCCAGGGTACCTGTCTCTG
CACCAGACAGCGGATGTCATGACCTTGAAGTGGACACCCAATCAGCTGATGAACGGGTCTGTGGGGGATC
TGGACTACGAGAAGAGTGTCTACTGGGACTACGCTGTGACCATCCGCTTAGAGGAGATAGTTTACCTGCA
CTGCCATCAACAAGTGGACAGCGGCGGGACTGTCGTGCTGGTGAGCCAGGATGGAATCCAGAGGCCACCC
TTCCGCTTCCCCAAGGGCGGGCACCTGCTACAGTTCCTCTCCTGTCTGGAGAATGGGCTGCTTCCGCACG
GGCAGCTGGACCCGCCGCTTTGGTCACAGCGAGGAAAGGGGAAGGTATTTCCTAAGTTGCGCAAGCGCAG
CCCACAGGGGTCCTCCGAGTCCACGTCTTCAGACAAGGAGGACGACGAAGCCACGGATTACGTGTTCCGC
ATCATCTACCCTGGCACGCAGTCTGAATTCGTGCCCCAGGACCTAATGGATGTCTCTATGAACAACCTTC
CACCCCTATGGCAACCCAGTCCTCGGAAGTCCTCCTGCTCTTCCTGTTCACAAAGCGGCTCAGCTGACGG
CGGCTCAACCAATGGCTGTAACCATGAGAGGGCCCCACTGAAACTGCTGTGTGATAACATGAAGTACCAG
ATCCTCTCCAGAGCCTTCTATGGATGGCTCGCCTACTGCAGACACCTGTCCACCGTGAGGACCCACCTGT
CAGCCCTGGTCAATCACATGATCGTGTCTCCAGACCTGCCCTGTGACGCTGGGCAAGGGTTGACAGCCAG
CATCTGGGAAAAATACATCCAGGACAGCACGACCTACCCGGAGCAGGAGCTGCTGCGTCTCATCTACTAT
GGAGGTGTCCAGCCTGAGATCCGCAGGGCAGTGTGGCCCTTCCTCCTCGGCCACTACCAGTTTGGGATGA
CAGAGATGGAGAGGAAAGAGGTAGACGAACAGATCCATGCCTGCTACGCACAAACCATGTCGGAGTGGCT
GGGCTGTGAAGCTATCGTGAGACAGAGGGAGCGGGAGTCCCACGCGGCTGCCCTGGCCAAGTGCTCTTCA
GGAGCCAGCCTGGACAGCCACCTTCACCGGATGCTGCACCGGGACTCCACCATCAGCAATGAGTCATCCC
AGAGCTGCAGCTCAGGCCGCCAGAACCTCCGACTGCAGAGCGACTCCAGCAGCAGCACACAGGTATTTGA
GTCTGTGGATGAGGTGGAGCAGACAGAGGCAGAAGGCAGGTCAGAAGAAAAACATCCCAAAATCCCCAAT
GGGAACCCAGCCAACGGCACTTGCTCCCCAGACTCCGGACACCCTTCCTCCCACAACTTCTCCTCTGGTC
TCTCCGAGCACTCTGAGCCCAGTCTTAGCACTGAAGACAGCGTCTTGGATGCCCAACGCAGCCTTCCAGC
TGTGTTTCGGCCTGGGGACAGCAGCGTGGAAGATGGGCAGAGCAGCGAAGCCACCACATCCCGGGACGAG
GCCCCTCGGGAGGAGCTGGCCGTGCAAGATAGCCTTGAGAGTGACCTCCTTGCCAACGAGAGCTTGGAGG
AGTTCATGTCTATCCCTGGCAGCCTGGACGTGGCCCTACCTGAGAAGGATGGCGCGGTGATGGACGGCTG
GCCCGGTGAGGCGGACAAGCCCAGTCGGGCTGACAGTGAGGACAACCTCTCAGAAGAGCCTGAGATGGAG
AGCCTGTTCCCTGCCCTGGCTTCTCTGGCTGTGACCTCCTCTGCCAATAACGAGGCATCCCCTGTGTCCT
CCAGTGGAGTCACCTATTCTCCAGAACTACTGGACCTGTACACCGTGAACCTGCACCGCATTGAGAAAGA
TGTGCAGAGGTGTGACCGCAGCTACTGGTACTTCACAGCAGCCAACCTGGAGAAGCTGAGGAACATCATG
TGCAGCTATATCTGGCAGCACATCGAGATCGGCTACGTCCAGGGCATGTGTGACCTCCTGGCCCCGTTGC
TGGTCATCCTGGATGATGAGGCCCTGGCCTTCAGTTGCTTCACGGAGCTGATGAAGAGGATGAACCAAAA
CTTCCCCCATGGAGGCGCCATGGATACGCACTTCGCCAACATGAGGTCTCTGATCCAGATCCTGGACTCC
GAGCTCTTCGAGCTGATGCATCAGAACGGCGATTACACCCACTTCTACTTTTGCTACCGCTGGTTCCTGC
TGGATTTCAAACGAGAGCTGGTCTATGATGACGTCTTCTCCGTGTGGGAAACTATCTGGGCTGCTAAGCA
CGTGTCCTCCGCCCACTACGTGCTGTTCATCGCGCTGGCGCTGGTGGAGGTCTACAGAGACATCATCCTG
GAGAACAATATGGACTTCACTGACATTATCAAGTTCTTCAACGAAATGGCTGAGCGGCACAACGCCAAGC
AGATTCTGCAGCTCGCCCGGGACCTCGTGCATAAGGTGCAGATTCTAATTGAGAACAAGTGA

Translation (1093 aa):
MASVPAEAETRQRLLRTVKKEVKQIMEEAVTRKFVHEDSSHIISFCAAVEACVLHGLRRRAAGFLRSNKI
AALFMKVGKGFPPAEELSRKVQELEQLIESARNQIQGLQENVRKLPKLPNLSPLAIKHLWIRTALFERVL
DKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKTADHFWTDPSADELVQRHRIHSSH
LRQDSPTKRPALCIQKRHSSGSMDDRPSISARDYVESLHQNSRATLLYGKNNVLVQPRDDMEAVPGYLSL
HQTADVMTLKWTPNQLMNGSVGDLDYEKSVYWDYAVTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPP
FRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVFPKLRKRSPQGSSESTSSDKEDDEATDYVFR
IIYPGTQSEFVPQDLMDVSMNNLPPLWQPSPRKSSCSSCSQSGSADGGSTNGCNHERAPLKLLCDNMKYQ
ILSRAFYGWLAYCRHLSTVRTHLSALVNHMIVSPDLPCDAGQGLTASIWEKYIQDSTTYPEQELLRLIYY
GGVQPEIRRAVWPFLLGHYQFGMTEMERKEVDEQIHACYAQTMSEWLGCEAIVRQRERESHAAALAKCSS
GASLDSHLHRMLHRDSTISNESSQSCSSGRQNLRLQSDSSSSTQVFESVDEVEQTEAEGRSEEKHPKIPN
GNPANGTCSPDSGHPSSHNFSSGLSEHSEPSLSTEDSVLDAQRSLPAVFRPGDSSVEDGQSSEATTSRDE
APREELAVQDSLESDLLANESLEEFMSIPGSLDVALPEKDGAVMDGWPGEADKPSRADSEDNLSEEPEME
SLFPALASLAVTSSANNEASPVSSSGVTYSPELLDLYTVNLHRIEKDVQRCDRSYWYFTAANLEKLRNIM
CSYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILDS
ELFELMHQNGDYTHFYFCYRWFLLDFKRELVYDDVFSVWETIWAAKHVSSAHYVLFIALALVEVYRDIIL
ENNMDFTDIIKFFNEMAERHNAKQILQLARDLVHKVQILIENK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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