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Report for CCDS39223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39223.1 Public Mus musculus 5 Git2 23 108 98 CCDS HistoryNCBI Gene:26431Re-query CCDS DB by CCDS ID:39223.1Re-query CCDS DB by GeneID:26431See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043283.13 ENSMUSP00000039718.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043283.13Link to Ensembl Protein Viewer:ENSMUSP00000039718.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043283Re-query CCDS DB by Protein ID:ENSMUSP00000039718
Original member NCBI NM_001077360.1 NP_001070828.1 Updated not alive Link to Nucleotide Sequence:NM_001077360.1Link to Protein Sequence:NP_001070828.1Re-query CCDS DB by Nucleotide ID:NM_001077360Re-query CCDS DB by Protein ID:NP_001070828
Current member NCBI NM_001077360.2 NP_001070828.1 Accepted alive Link to Nucleotide Sequence:NM_001077360.2Link to Protein Sequence:NP_001070828.1Re-query CCDS DB by Nucleotide ID:NM_001077360Re-query CCDS DB by Protein ID:NP_001070828Link to BLAST:NP_001070828.1

Chromosomal Locations for CCDS 39223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114730182 114730394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114730992 114731055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114733193 114733381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114733861 114733943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114739033 114739281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114745429 114745571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114748184 114748295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114749243 114749340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114749562 114749634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114752279 114752330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114753279 114753324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114761573 114761667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114764347 114764477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114764587 114764673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114766452 114766557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114767096 114767208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114769617 114769750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114773314 114773365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGTCGAAGCGGCTCCGGAGCAGCGACGTGTGCGCCGACTGCAACGGGCCTGATCCTTCCTGGGCGTCAG
TAAATAGGGGAACTTTCATATGTGACGAATGTTGCAGTGTCCATCGGAGCCTGGGGCGCCATATCTCCCA
AGTGAGGCATCTTAAACACACAGCATGGCCTCCAACCCTGCTCCAGATGGTTGAGACCTTGTACAACAAT
GGTGCTAACTCTATATGGGAACACTCTCTGCTGGACCCTGCCTCTATCATGAGTGGGAGGCGGAAAGCTA
ACCCACAGGACAAAGTTCACCCCAATAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCGTTCGT
CCACCGATTGCCCTGCCGCGAGGACGACAGCGTGACGGCCAAAGATCTCAGTAAGCAACTCCATTCAAGT
GTGAGAACAGGGAATCTTGAGACCTGTCTGAGACTGTTGTCTTTAGGAGCCCAAGCCAACTTCTTTCATC
CTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCTTACAGGCTGAATTGCTGGC
CGTGTATGGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAGACTCCTGTTGACTATGCAAGGCAAGGA
GGGCACCATGAGTTGGCAGAACGCCTCATAGAAATACAGTACGAGCTGACGGATAGACTGGCCTTCTACC
TCTGCGGCCGGAAACCAGATCATAAAAGCGGACAGCACTTTCTAATTCCTCAGAGGGCAGACAGCAGCCT
GGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCATTTGTTTGAAGAA
CTTGCCATGGATGTGTACGACGAAGTTGACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACGCAGAACC
ACAGTACCTTGGTAACCGAGACGACCGTCGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCTCCACACG
AAACCAGGGCAGACAGAAATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCTGGTCATCGACATCCTC
AGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAGCTCATATTGA
GAACAGTCAGTACCCAGCACAGCACTGAGAGCCAAGACAACGACCAGCCAGACTATGACAGTGTGGCCTC
CGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGAGT
GAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTCTGACCACAAGG
ACACTGCAAGCCACTCGTCCCTAAAGCGACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCATGTACGA
GACTGGATCAGGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCGGACGAGA
CTTCAACCCTTCCCCACGCATGCCTCCAGACTGGAGAAGCAGAACAGCACCCCGGAGAGTGATTATGACA
ACACTGCCTGTGACCCTGAGCCAGACGACACGGGGTCAACCCGGAAGGGACGGCAGCGGAGCATGCTCTG
GCAAGGTGATGGCTTATTGCCAGATACAGCAGAACCCCACTCGGTCCCCAGCCCCACCCTCCCCAGCACA
GAAGACGTCATCCGGAAGACCGAGCAGATCACCAAAAACATCCAGGAGCTCCTGCGAGCAGCCCAGGAGA
ACAAGCATGACAGCTATATTCCCTGCTCAGAGAGGATACACGTTGCTGTAACCGAGATGGCAGCCCTGTT
CCCCAAAAAACCCAAGTCTGACACGGTGAGGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACCGGCTC
CAGTCGGAGTGCAGAAAGGCTCTCCCAGGAGACTCCAGCTTACCCACAGATGTGCAGCTGGTCACACAGC
AGGTCATCCAGTGTGCCTATGACATCGCCAAGGCCGCCAAACAGCTGGTCACAATCACCACCAAAGAGAA
CAGCAGCTGA

Translation (679 aa):
MSKRLRSSDVCADCNGPDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVETLYNN
GANSIWEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSKQLHSS
VRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYGADPGTQDSSGKTPVDYARQG
GHHELAERLIEIQYELTDRLAFYLCGRKPDHKSGQHFLIPQRADSSLDLSELAKAAKKKLQSLSNHLFEE
LAMDVYDEVDRRETDAVWLATQNHSTLVTETTVVPFLPVNPEYSSTRNQGRQKLARFNAHEFATLVIDIL
SDAKRRQQGSPLSRSKDNVELILRTVSTQHSTESQDNDQPDYDSVASDEDTDVETRASKANRQKLQTLQS
ENSSLRRQATASACQVQTGSDHKDTASHSSLKRRPSARGSRPMSMYETGSGQKPYLPMGEASHPEESRTR
LQPFPTHASRLEKQNSTPESDYDNTACDPEPDDTGSTRKGRQRSMLWQGDGLLPDTAEPHSVPSPTLPST
EDVIRKTEQITKNIQELLRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDTVRTSLRLLTSSAYRL
QSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVTITTKENSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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