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Report for CCDS19863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19863.1 Public Mus musculus 5 Cyp3a41a 23 108 98 CCDS HistoryNCBI Gene:53973Re-query CCDS DB by CCDS ID:19863.1Re-query CCDS DB by GeneID:53973See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094111.5 ENSMUSP00000091659.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094111.5Link to Ensembl Protein Viewer:ENSMUSP00000091659.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094111Re-query CCDS DB by Protein ID:ENSMUSP00000091659
Original member Current member NCBI NM_017396.3 NP_059092.2 Accepted alive Link to Nucleotide Sequence:NM_017396.3Link to Protein Sequence:NP_059092.2Re-query CCDS DB by Nucleotide ID:NM_017396Re-query CCDS DB by Protein ID:NP_059092Link to BLAST:NP_059092.2

Chromosomal Locations for CCDS 19863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145694507 145694602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145698137 145698299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145699726 145699952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145702128 145702288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145704791 145704860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145705750 145705877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145708457 145708605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145708877 145708965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145709045 145709158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145713514 145713613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145715470 145715522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145717925 145718018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145719979 145720049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGAACCTATTTTCAGCTCTCTCACTGGATACATGGGTCCTCCTGGCAATCATCCTGGTGCTCCTCTACC
GATATGGGACCCGTACACATGGACTTTTTAAGAAACAGGGGATTCCTGGGCCCAAACCTCTGCCATTTTT
AGGCACTGTGCTGAATTATTACAAGGGTTTATGGAAATTTGACATGGAGTGCTATGAAAAGTATGGAAAA
ACATGGGGGTTGTTTGATGGTCAAATGCCTCTCTTTGTCATCACGGACCCAGAGATGATTAAGAATGTTC
TAGTGAAGGAATGTTTTTCTGTCTTCACAAACCGGCGGGAATTTGGCCCAGTGGGGATAATGAGTAAAGC
TATCTCAATATCTAAGGATGAGGAATGGAAGAGATATAGAGCTTTGCTGTCCCCCACATTCACCAGTGGA
AAACTCAAGGAGATGTTTCCTGTCATTGAACAGTATGGAGACATTTTGGTAAAGTACTTGATGCAAGAGG
CAGAGAAAGGCAAGCCTGTTACTATGAAAGATGTGTTAGGTGCTTACAGCATAGATGTGATCACCAGCAC
ATCATTTGGAGTGAATGTGGATTCCCTCAACAACCCAGAGGATCCCTTTGTGGAGAAAGCCAAAGGGATT
TTAAGAGTTGACTTTTTTGATCCTTTGGTCTTCTCAGTTGTACTTTTTCCATTCCTGACACCAGTATATG
AAATGTTAAATATCTGCATGTTCCCAAAGGATTCAATAGAATTTTTCAAAAAATTTGTGAACAGAATGAA
GGAAAGCCGCCTCGATTCTAAGCAGAAGCACCGAGTTGATTTTCTTCAGCTGATGATGAACGCTCATAAT
AATTCCAAAGACAAAGACTCTCATAAAGCCCTTTCTGACATGGAGATCACAGCCCAGTCAATTGTCTTTA
TTTTTGCTGGGTATGAAACCACCAGTAGCACACTTTCCTTCACCCTGTATTGTTTGGCCACTCACCCTGA
TATCCAGAAGAAACTGCAGGAAGAGATCGATGAGACTCTGCCCAATAAGGCACCTCCCACCTATGATACT
GTGATGGAGATGGAATACCTGGATATGGTGCTTAATGAAACCCTCAGATTATATCCCATTGGTAATAGAC
TTGAGAGATTCTGTAAGAAAGATGTTGAACTCAATGGTGTGTATATCCCCAAAGGGTCAACAGTGATGAT
TCCATCTTATGCTCTTCACCATGACCCACAGCACTGGCCAGAGCCTGAAGAATTCCAACCTGAAAGGTTC
AGCAAAGAGAACAAGGGCAGCATTGATCCTTATTTATATATGCCCTTTGGAATTGGACCCAGGAACTGCA
TTGGCATGAGGTTTGCTTTCATGACTATGAAACTTGCTCTCACTAAAGTTATGCAGAACTTTTCCTTCCA
GCCTTGTCAGGAAACACAGATACCTCTGAAATTAAGCAGACAAGGACTTCTTCAACCAGAAAAACCCATT
GTTCTAAAGGTTGTACCACGGGATGTAGTTATAACTGGAGCATGA

Translation (504 aa):
MNLFSALSLDTWVLLAIILVLLYRYGTRTHGLFKKQGIPGPKPLPFLGTVLNYYKGLWKFDMECYEKYGK
TWGLFDGQMPLFVITDPEMIKNVLVKECFSVFTNRREFGPVGIMSKAISISKDEEWKRYRALLSPTFTSG
KLKEMFPVIEQYGDILVKYLMQEAEKGKPVTMKDVLGAYSIDVITSTSFGVNVDSLNNPEDPFVEKAKGI
LRVDFFDPLVFSVVLFPFLTPVYEMLNICMFPKDSIEFFKKFVNRMKESRLDSKQKHRVDFLQLMMNAHN
NSKDKDSHKALSDMEITAQSIVFIFAGYETTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDT
VMEMEYLDMVLNETLRLYPIGNRLERFCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWPEPEEFQPERF
SKENKGSIDPYLYMPFGIGPRNCIGMRFAFMTMKLALTKVMQNFSFQPCQETQIPLKLSRQGLLQPEKPI
VLKVVPRDVVITGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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