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Report for CCDS19890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19890.1 Public Mus musculus 5 Stard13 23 108 98 CCDS HistoryNCBI Gene:243362Re-query CCDS DB by CCDS ID:19890.1Re-query CCDS DB by GeneID:243362See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110483.8 ENSMUSP00000106109.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110483.8Link to Ensembl Protein Viewer:ENSMUSP00000106109.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110483Re-query CCDS DB by Protein ID:ENSMUSP00000106109
Original member NCBI NM_146258.2 NP_666370.3 Updated not alive Link to Nucleotide Sequence:NM_146258.2Link to Protein Sequence:NP_666370.3Re-query CCDS DB by Nucleotide ID:NM_146258Re-query CCDS DB by Protein ID:NP_666370
Current member NCBI NM_146258.3 NP_666370.3 Accepted alive Link to Nucleotide Sequence:NM_146258.3Link to Protein Sequence:NP_666370.3Re-query CCDS DB by Nucleotide ID:NM_146258Re-query CCDS DB by Protein ID:NP_666370Link to BLAST:NP_666370.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666370.3 1113 Q923Q2 1113 100% 0 0

Chromosomal Locations for CCDS 19890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 151039655 151039772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151042119 151042295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151045111 151045328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151045797 151046018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151046864 151046978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151047592 151047802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151052364 151052562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151059459 151059618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151060748 151060921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151062296 151063656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151073301 151073364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151092747 151092828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151095421 151095492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151189926 151190094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3342 nt):
ATGTTCAGCCAGGTGCCCAGGACGCCGGCTGCAGGCTGCTACTATCTAAACCCCTTGACACCTGAGAGCC
AGGAGATGTACTTGCGATTTGATCAGACTGCCAGACGCTCTCCCTACAGGATGAGCCGGATCCTAGCACG
CCATCACCTAGTGACTAAAATCCAGCAAGAAATTGAGGCGAAGGAAGCATGTGACTGGCTCCGAGCTGCC
GGGTTCCCGCAGTACGCTCAGCTGTATGAAGATTCGCAGTTCCCCATCAACATTGCGGCCGTCAAAAAAG
ACCATGACTTTCTTGAAAGGGACCTTGTAGAACCTCTTTGCAGACGACTTAATACGTTGAACAAGTGTGC
CTCAATGAGACTTGATGTGAACTTCCAAAGGAAAAAGGGTGACGACTCAGATGAGGAAGACCTGTGCATC
AGCAACAAATGGACTTTCCAGAGAACCAGCCGCAGATGGTCCCGTGTGGATGACCTGCATACGCTGTTCC
CCGTGGCAGACAGAAACGGGTCCCCAGGAGGCCCTAGGATGAGAAACACAGCCAGCAGTGAGAGCGTGCT
CACGGATCTGAGTGAGCCAGAGGTCTGCTCTATTCACAGCGAAAGCAGTGGGGGCAGTGACAGCCGCAGC
CAATCAGGGCATCATTCTGCTGACAGTACGCATGCGCTGGAGGCCACCCTGGTCAGTAGCAGCCTCCCAC
AGTCTACCCGAGAGGGTCTCAACCAGTCTTTTCACCCCAAGAATGAGAAACCCACCAGGACCAGGGCCAA
GTCCTTTCTGAAACGCATGGATACCCTGAGAGTGAAGGGTGCACTTGGGAGGCATAAGGGGCCAGGGCGG
ACAGGAGGCCTGGTCATCAGTAGGCCTGTGCTGCAGCAGGAACCGGAGTCCTTTAAGACCATGCAGTGCG
TCCAGATACCCAACGGAGATCTGCAGACCTCACCTCCAGCTGCCTGCAGGAAAGGCCTCCCATGCTCCAG
TAAGTCAAGTGGTGAGAGCAGCCCCCTGGAGAACAGCAGCACAGTGAGCACTCCGTGCATGAAGGAACGC
AAGTGCCACCACGAGGCCAACAAGCGCGGTGGCATGTACCTGGAGGACCTGGATGTGCTGGCAGGGACGG
CATTACCAGATACGTCAGACCAAAACCACATGCATGGGTTTCACTCCCAAGAAAACTTGGTGGTCCACAT
TCCCAAGGATCACAAACCAGGAACGTTCCCCAAGGCACTTTCTATAGAAAGCCTCTCACCCACAGACAAC
AGCAATGGGGTTAACTGGAGGACCGGGAGTATCTCCCTGGGTAGGCAACAGGGCCCTGGCATGAGGGAAC
CCAGACTCATGTCTTCCTGCCACAGGGCCAGCCGTGTCAGTATCTATGACAATGTCCCCAGCTCGCACCT
GTATGCCAGCACAGGAGATCTGTTGGACCTGGAGAAAGACGGCCTCCTTCCACAGCTGGATGACATCCTA
CAGCATGTCAATGGCATACAAGAGGTAGTGGATGACTGGTCAAAAAACATCTTACCCGAACTGCAAAGTC
ACAGCACATTGGCAGGGGATCCTGGTCTGTCCCCATTCCCATCTCCCAATCAGGTCACTTTAGATTTTGA
AGGCAACTCTGTCTCAGAAGGTCGGACAACACCTAGTGATGTGGAAAGGGACAGGACTTCTCTGAATGAA
TCGGAGGCCACTGGGGTCAGAGAAAGAAGGGATTCTGGTGTGGGGGCCTCTCTGACCAGACCAAACAGAC
GACTAAGGTGGAGCAGCTTCCAGCTCTCACACCAGCCCCAGCCGTCTCCAGCCACCCCGCACATCAGCAG
CCAGACGGCCGCCCAGCTGAACCTGCTCCAGCGCTTCTCCCTACTTCGTCTTACGGCCATCATGGAGAAG
TACTCTATGTCCAACAAGCACGGCTGGACCTGGTCCGTTCCAAAGTTCATGAAGAGGATCAAAGCTCCTG
ACTACCGAGACAAGGCTGTCTTCGGTGTTCCGCTCATAGTCCACGTTCAGAGAACAGGACAGCCCCTGCC
TCAGAGCATCCAACAAGCACTGAGGTATCTACGTAGCAACTGTCTGGATCAGGTGGGTCTTTTCCGCAAG
TCAGGAGTGAAGTCTCGAATCCATGCCCTCCGTCAGATGAATGAGAACTTCCCTGACAATGTGAGCTATG
AAGACCAGTCTGCATACGACGTGGCAGATATGGTGAAGCAGTTCTTCCGGGACCTCCCTGAGCCCCTGTT
CACCAACAAGCTCAGCGAGACCTTCCTCCACATCTATCAGTATGTCCCCAAAGAGCAGCGGCTGCAGGCC
GTGCAGGCAGCCATCCTGCTGCTGGCCGACGAGAACCGGGAGGCCCTGCAGACTCTCCTGTGCTTCCTGC
ATGACGTAGTAAACTTGGTGGACGAGAATCAGATGACGCCCATGAATCTGGCCGTGTGCCTGGCCCCCTC
CCTCTTTCACCTAAACTTACTGAAGAAAGAAAGCTCCCCAAAAGTCATCCAGAAGAAATACGCCACTGGG
AAGCCAGATCAGAAGGACCTCAATGAAAATCTAGCTGCGGCTCAGGGGCTGGCCCACATGATCACGGAAT
GCAACCGACTCTTTGAGGTTCCACACGAGATGGTGGCCCAGTCTCGGGACTCCTACTTAGAGGCTGAAAT
CCATGTGCCCAGCCTGGAAGACTTGGGAGCACAGCTGGCGGAGAGCGGGGCAACTTTTCACACGTACTTG
GAGCATCTAGTCCAAGGCCTCCAGAAAGAGGCTAAGGAGAAATTCAAGGGATGGGTCACATGTTCCAGCC
CTGACAACACAGACCTTGCTTTCAAAAAGGTGGGCGATGGGCACCCGCTGAAGCTGTGGAAAGCATCTGT
GGAGGTGGAGGCACCACCCTCCGTGGTGCTGAACCGTGTGCTGAGAGAACGTCACCTGTGGGATGAGGAC
TTTGTGCAGTGGAAGGTGGTGGAAAGATTGGACAAACAAACGGAAATCTACCAGTACGTGCTAAACAGCA
TGGTTCCACATCCCTCCAGAGACTTCCTGGTGCTCAGGACCTGGAAGACTGACCTGCCCAAAGGAATGTG
CACCCTGGTGTCCCTGTCTGTGGAGTACGAAGAAGCCCAGCTCATGGGTGGCGTGAGGGCGGTGGTGATG
GACTCTCAGTACCTGATAGAACCCTGCGGTTCTGGCAAGTCCAGGCTGACCCACATCTGCAGAATAGACC
TGAAGGGCCACTCCCCAGAATGGTACAGCAAAGGCTTTGGACACCTCTGTGCGGCAGAAGTTACCAGAAT
TAGGAACTCTTTCCAGCCTCTCGTTGCTGAGGGTCCAGAAACAAAAATCTAA

Translation (1113 aa):
MFSQVPRTPAAGCYYLNPLTPESQEMYLRFDQTARRSPYRMSRILARHHLVTKIQQEIEAKEACDWLRAA
GFPQYAQLYEDSQFPINIAAVKKDHDFLERDLVEPLCRRLNTLNKCASMRLDVNFQRKKGDDSDEEDLCI
SNKWTFQRTSRRWSRVDDLHTLFPVADRNGSPGGPRMRNTASSESVLTDLSEPEVCSIHSESSGGSDSRS
QSGHHSADSTHALEATLVSSSLPQSTREGLNQSFHPKNEKPTRTRAKSFLKRMDTLRVKGALGRHKGPGR
TGGLVISRPVLQQEPESFKTMQCVQIPNGDLQTSPPAACRKGLPCSSKSSGESSPLENSSTVSTPCMKER
KCHHEANKRGGMYLEDLDVLAGTALPDTSDQNHMHGFHSQENLVVHIPKDHKPGTFPKALSIESLSPTDN
SNGVNWRTGSISLGRQQGPGMREPRLMSSCHRASRVSIYDNVPSSHLYASTGDLLDLEKDGLLPQLDDIL
QHVNGIQEVVDDWSKNILPELQSHSTLAGDPGLSPFPSPNQVTLDFEGNSVSEGRTTPSDVERDRTSLNE
SEATGVRERRDSGVGASLTRPNRRLRWSSFQLSHQPQPSPATPHISSQTAAQLNLLQRFSLLRLTAIMEK
YSMSNKHGWTWSVPKFMKRIKAPDYRDKAVFGVPLIVHVQRTGQPLPQSIQQALRYLRSNCLDQVGLFRK
SGVKSRIHALRQMNENFPDNVSYEDQSAYDVADMVKQFFRDLPEPLFTNKLSETFLHIYQYVPKEQRLQA
VQAAILLLADENREALQTLLCFLHDVVNLVDENQMTPMNLAVCLAPSLFHLNLLKKESSPKVIQKKYATG
KPDQKDLNENLAAAQGLAHMITECNRLFEVPHEMVAQSRDSYLEAEIHVPSLEDLGAQLAESGATFHTYL
EHLVQGLQKEAKEKFKGWVTCSSPDNTDLAFKKVGDGHPLKLWKASVEVEAPPSVVLNRVLRERHLWDED
FVQWKVVERLDKQTEIYQYVLNSMVPHPSRDFLVLRTWKTDLPKGMCTLVSLSVEYEEAQLMGGVRAVVM
DSQYLIEPCGSGKSRLTHICRIDLKGHSPEWYSKGFGHLCAAEVTRIRNSFQPLVAEGPETKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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