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Report for CCDS20322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20322.1 Public Mus musculus 6 Arhgap25 23 108 98 CCDS HistoryNCBI Gene:232201Re-query CCDS DB by CCDS ID:20322.1Re-query CCDS DB by GeneID:232201See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101197.8 ENSMUSP00000098758.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101197.8Link to Ensembl Protein Viewer:ENSMUSP00000098758.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101197Re-query CCDS DB by Protein ID:ENSMUSP00000098758
Original member Current member NCBI NM_175476.4 NP_780685.2 Accepted alive Link to Nucleotide Sequence:NM_175476.4Link to Protein Sequence:NP_780685.2Re-query CCDS DB by Nucleotide ID:NM_175476Re-query CCDS DB by Protein ID:NP_780685Link to BLAST:NP_780685.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780685.2 622 Q8BYW1-3 622 100% 0 0

Chromosomal Locations for CCDS 20322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87459920 87460133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87462931 87463463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87465501 87465697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87466473 87466594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87467913 87467986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87470513 87470645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87476143 87476350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87488192 87488308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87492178 87492265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87495913 87496095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGACCGGGGAGCAGATGGCGGCCTTTCACCCACCCACCACTCCCAACCCCCTGGAAAGGCCAATTAAGG
TGGGCTGGCTGAAGAAGCAGAGGTCCATCGTGAAAAACTGGCAGCAGCGGTACTTTGTGTTGAGAGCTCA
GCAACTCTACTACTACAAGGACGAAGAGGACTCAAAGCCACAGGGCTGCATGTATCTGCCAGGCAGTACA
GTCAAAGAAATTGCCACAAACCCCGAAGAAGCTGGGAAATTTGTCTTTGAAGTTATTCCAGCCTCAAGTG
ACCAGAACCGCATTGGACAAGACTCCTACGTCCTCATGGCCAGCTCCCAGGTAGAGATGGAGGAGTGGGT
TAAGTTCCTCAGGAGAGTTGCTGGCACGCCCTCTGGAGCGGTGTTTGGCCAGCGTCTGGATGAGACTGTG
GCCTATGAGCAGAAGTTTGGCCCTCACCTGGTGCCCATCTTGGTGGAGAAGTGCGCTGAGTTCATCCTGG
AACATGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCTGAGAGA
TGCTTTCGATGCGGGGGAGCGGCCCTCCTTTGACAGGGACACAGATGTGCACACGGTGGCATCTCTACTA
AAGCTCTACCTCCGAGACCTGCCAGAGCCTGTGGTTCCTTGGAGTCAGTATGAAGGGTTCCTGCTCTGTG
GGCAGCTCATGAACGCAGATGAGGCAAAGGCTCAGCAGGAGTTGGTGAAGCAGCTTTCTACCCTTCCCCG
AGACAACTACAACCTCCTGAGCTACATCTGCAGATTTCTGCATGAAATCCAGCTGAACTGTGCCGTCAAC
AAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACCTCATCAGGTCGAAGGTTGAAGACCCAG
CTGTGATTATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACCATGATGATCAGAGACCACGAAGTCCT
CTTCCCCAAGTCTAAGGATGCACCGATCTCACCCCCTGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTG
CCGCGAAGCTCTGTGGGGTGGGATGCCACGGAAGACCCACCCCTTTCTAGGACAGACAGCTTCAGTAACA
CAGCAAGTAGTCCTGATGCCACCAGTCCCACTGGACCACTGCCCAGTGACCAGCATCAGGAAGACAGCGG
AAAAGCCCCCAGGGAAAACCCAGGAGACTGGAAGATGCAATCCCGTAAAAGGACTCAAACGCTTCCCAAC
CGGAAGTGTTTCCTGACGTCCGCATTCCAAGGCACCACCAGCAGTAAACTGGAAATCTTTAAAAATGAGT
TCTGGTCTCCATCTTCAGAGGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGACTTGCGCCA
CCTTTCCAATGACCAGCGGACTTCTACCTACGATAATGTCCCCACCTCACCACAGTCCCAAGGGAACCCA
GCAGGTGCACTCTCTCCCCCTGCCAGTGACTCCAAGAGAGATGCTCTTGTTAGCACAGACTCTGAAATGG
AGGCTGGAAGCAAGAACTCTGGCGAGGATGACCTTGATTCTCTGCAGAGGACAGTCCAGAGCCTACAGAA
GGAAATAGAAACCCAGAAGCAGGTCTATGAGGAACAGATTAAAAACCTGGAGAAGGAAAATTACGATGTC
TGGGCTAAGGTGGTGAGGCTCAATGAAGAACTCGAGAGGGAGAGGAAGAAATTCGCGGCCCTGGAAATCA
GCCTTCGAAATGTGGAGCGCTCCCGGGAGGACGTTGAGAAGAGGAACAGAGTCTTGGAAGAAGAAGTCAA
GGAGTTTGTGAAGTCGATGGAGAAGCCCAAGACAAAGACGGATCCTTGA

Translation (622 aa):
MTGEQMAAFHPPTTPNPLERPIKVGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDSKPQGCMYLPGST
VKEIATNPEEAGKFVFEVIPASSDQNRIGQDSYVLMASSQVEMEEWVKFLRRVAGTPSGAVFGQRLDETV
AYEQKFGPHLVPILVEKCAEFILEHGVSEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLL
KLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSTLPRDNYNLLSYICRFLHEIQLNCAVN
KMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPISPPAQKNDAKKAPV
PRSSVGWDATEDPPLSRTDSFSNTASSPDATSPTGPLPSDQHQEDSGKAPRENPGDWKMQSRKRTQTLPN
RKCFLTSAFQGTTSSKLEIFKNEFWSPSSEAKAGEGHRRTMSQDLRHLSNDQRTSTYDNVPTSPQSQGNP
AGALSPPASDSKRDALVSTDSEMEAGSKNSGEDDLDSLQRTVQSLQKEIETQKQVYEEQIKNLEKENYDV
WAKVVRLNEELERERKKFAALEISLRNVERSREDVEKRNRVLEEEVKEFVKSMEKPKTKTDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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