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Report for CCDS51872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51872.1 Public Mus musculus 6 Rpusd3 23 108 98 CCDS HistoryNCBI Gene:101122Re-query CCDS DB by CCDS ID:51872.1Re-query CCDS DB by GeneID:101122See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113092.8 ENSMUSP00000108715.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113092.8Link to Ensembl Protein Viewer:ENSMUSP00000108715.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113092Re-query CCDS DB by Protein ID:ENSMUSP00000108715
Original member Current member NCBI NM_001033204.1 NP_001028376.1 Accepted alive Link to Nucleotide Sequence:NM_001033204.1Link to Protein Sequence:NP_001028376.1Re-query CCDS DB by Nucleotide ID:NM_001033204Re-query CCDS DB by Protein ID:NP_001028376Link to BLAST:NP_001028376.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028376.1 344 Q14AI6-1 344 100% 0 0

Chromosomal Locations for CCDS 51872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113415531 113415722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113416307 113416446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113416789 113416912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113417141 113417225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113417304 113417411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113417847 113417946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113418031 113418075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113418810 113418949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113419218 113419318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGGAGCCCTGAGAGTTTTGCGTTATGTCTCTATGATCTGGCGGCCGGAGCTGGGGTCTTGCGCACGGC
AGAGGGATGCCGGCTTCGGCACCGAGGCCCGGCGTCCGTCTCAACCTCACCGCTCCAGCAAGCACAAGGA
CCTAGTCGAGGACCAGCCCTTCCCGGGGCTGCTGAGGACGGAGAACCTCGGCCTGGAGGAGCTGGCTCAT
GTCCTGAGGGCAGCTGTGGTGGATCAGAAAGGACCTCTGGTGACACTGAACAAGCCACAGGGTCTGCCTG
TGACAGGGAGACCAGGAGAGCTGACGCTGCTATCTGTGCTGCCGCAGCTGAGCCAGGCCCTGGGGCTCGA
ACACCAGGAGCTCCAGGTTGTGCGAGCACCTGGGAAGGAGGCCTCCGGACTTGTGCTCCTCTCCAGCTGT
CCCCAGACAGCAAGCCGCCTGCAGAAGTTCTTTATCCACTCAAGGAGAGCACAGAGACCCACAGCCACCT
ACTGTGCTGTCACTGATGGCATCCCTGAGCCTTCAGAGGGGACAGTCTGCATGCCTCTGAAGATGGAACA
AATGAATGACGTTGATCTTGCAGTCCCAGTGATGTCCCCATCTCGAAAGGACATCCAGGAAGGTGTCAAA
AGGACCCTCAGCCGTTTCCATGTGATGGCCACAGGCCGTGGCTGTGCCCTGGTCCAGCTGCAGCCACTGA
CAGTCTTCCCCAATCAGCTGCAGGTACACATGGCTCTACAGCTCTGTCCAATTCTTGGGGACCACACTTA
TGCTGCTCGTGTGGGCACCGTTCTGGGCCAGCGCTTTCTGTGGCCAGCCGAGACCACCAAGCCCCAGAGA
CAGGTCCTGGATGAAGCCCTGCTCAGACACCTCCGCCTAAGTCCTTCCCAAGTGGCCCAGATGCCTTTGC
ACCTGCACCTTCACCGCCTCCTCCTCCCAGGCACCGGATCCAGGGACCCCCCTAGTGAACTTCTGGCACC
CCTGCCCCCTTACTTCTCTCGGACCCTGCAGTGCCTTCGGCTCTCTCAACAGTAG

Translation (344 aa):
MGALRVLRYVSMIWRPELGSCARQRDAGFGTEARRPSQPHRSSKHKDLVEDQPFPGLLRTENLGLEELAH
VLRAAVVDQKGPLVTLNKPQGLPVTGRPGELTLLSVLPQLSQALGLEHQELQVVRAPGKEASGLVLLSSC
PQTASRLQKFFIHSRRAQRPTATYCAVTDGIPEPSEGTVCMPLKMEQMNDVDLAVPVMSPSRKDIQEGVK
RTLSRFHVMATGRGCALVQLQPLTVFPNQLQVHMALQLCPILGDHTYAARVGTVLGQRFLWPAETTKPQR
QVLDEALLRHLRLSPSQVAQMPLHLHLHRLLLPGTGSRDPPSELLAPLPPYFSRTLQCLRLSQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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