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Report for CCDS20497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20497.1 Public Mus musculus 6 Aicda 23 108 98 CCDS HistoryNCBI Gene:11628Re-query CCDS DB by CCDS ID:20497.1Re-query CCDS DB by GeneID:11628See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043301.13 ENSMUSP00000040524.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043301.13Link to Ensembl Protein Viewer:ENSMUSP00000040524.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043301Re-query CCDS DB by Protein ID:ENSMUSP00000040524
Original member Current member NCBI NM_009645.2 NP_033775.1 Accepted alive Link to Nucleotide Sequence:NM_009645.2Link to Protein Sequence:NP_033775.1Re-query CCDS DB by Nucleotide ID:NM_009645Re-query CCDS DB by Protein ID:NP_033775Link to BLAST:NP_033775.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033775.1 198 Q9WVE0 198 100% 0 0

Chromosomal Locations for CCDS 20497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122553902 122553909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122559471 122559618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122561041 122561311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122561841 122561956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122562420 122562473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGACAGCCTTCTGATGAAGCAAAAGAAGTTTCTTTACCATTTCAAAAATGTCCGCTGGGCCAAGGGAC
GGCATGAGACCTACCTCTGCTACGTGGTGAAGAGGAGAGATAGTGCCACCTCCTGCTCACTGGACTTCGG
CCACCTTCGCAACAAGTCTGGCTGCCACGTGGAATTGTTGTTCCTACGCTACATCTCAGACTGGGACCTG
GACCCGGGCCGGTGTTACCGCGTCACCTGGTTCACCTCCTGGAGCCCGTGCTATGACTGTGCCCGGCACG
TGGCTGAGTTTCTGAGATGGAACCCTAACCTCAGCCTGAGGATTTTCACCGCGCGCCTCTACTTCTGTGA
AGACCGCAAGGCTGAGCCTGAGGGGCTGCGGAGACTGCACCGCGCTGGGGTCCAGATCGGGATCATGACC
TTCAAAGACTATTTTTACTGCTGGAATACATTTGTAGAAAATCGTGAAAGAACTTTCAAAGCCTGGGAAG
GGCTACATGAAAATTCTGTCCGGCTAACCAGACAACTTCGGCGCATCCTTTTGCCCTTGTACGAAGTCGA
TGACTTGCGAGATGCATTTCGTATGTTGGGATTTTGA

Translation (198 aa):
MDSLLMKQKKFLYHFKNVRWAKGRHETYLCYVVKRRDSATSCSLDFGHLRNKSGCHVELLFLRYISDWDL
DPGRCYRVTWFTSWSPCYDCARHVAEFLRWNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIGIMT
FKDYFYCWNTFVENRERTFKAWEGLHENSVRLTRQLRRILLPLYEVDDLRDAFRMLGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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