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Report for CCDS52063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52063.1 Public Mus musculus 7 Nectin2 23 108 98 CCDS HistoryNCBI Gene:19294Re-query CCDS DB by CCDS ID:52063.1Re-query CCDS DB by GeneID:19294See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52063.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108450.4 ENSMUSP00000104089.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108450.4Link to Ensembl Protein Viewer:ENSMUSP00000104089.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108450Re-query CCDS DB by Protein ID:ENSMUSP00000104089
Original member Current member NCBI NM_001159724.1 NP_001153196.1 Accepted alive Link to Nucleotide Sequence:NM_001159724.1Link to Protein Sequence:NP_001153196.1Re-query CCDS DB by Nucleotide ID:NM_001159724Re-query CCDS DB by Protein ID:NP_001153196Link to BLAST:NP_001153196.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153196.1 467 P32507-2 467 100% 0 0

Chromosomal Locations for CCDS 52063.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19724481 19724869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19730038 19730186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19730612 19730729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19732915 19733211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19738012 19738374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19749215 19749302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGCCCGGGCCGCAGTCCTCCCGCCGTCCAGATTGTCACCGACGCTGCCGTTGTTGCCGCTGCTACTGC
TCCTGCTTCAGGAAACAGGAGCCCAAGATGTGCGGGTACGAGTGCTTCCCGAGGTCCGGGGCCGCTTGGG
AGGCACCGTGGAGTTACCGTGCCACCTGCTCCCACCCACGACGGAGCGCGTCTCTCAGGTGACCTGGCAG
CGCCTGGATGGCACAGTTGTGGCTGCTTTCCACCCATCCTTCGGAGTGGATTTCCCCAACTCTCAGTTCA
GCAAGGACCGTCTGTCCTTTGTCAGAGCGAGACCAGAAACAAACGCAGACCTGCGGGATGCCACACTGGC
CTTCCGGGGACTGAGGGTAGAGGACGAGGGCAATTACACCTGCGAGTTTGCCACGTTTCCCAACGGTACC
CGCAGGGGGGTGACCTGGCTCAGAGTCATAGCCCAGCCTGAGAACCACGCTGAAGCCCAGGAGGTCACAA
TTGGCCCCCAGTCGGTGGCTGTAGCCCGCTGTGTCTCCACTGGGGGCCGCCCCCCTGCCCGAATCACCTG
GATCTCATCTCTGGGTGGAGAGGCCAAAGATACTCAGGAGCCAGGGATACAGGCTGGCACCGTCACTATC
ATCAGCCGATACTCCTTGGTGCCCGTGGGCCGAGCGGATGGCGTCAAGGTCACGTGTAGAGTGGAACACG
AGAGCTTCGAAGAGCCGATCCTGCTGCCAGTGACCCTCTCTGTGCGCTACCCTCCAGAAGTATCCATCTC
CGGCTATGATGACAACTGGTACCTTGGCCGCAGTGAGGCCATACTGACCTGTGATGTACGAAGCAACCCA
GAGCCCACAGACTATGACTGGAGCACGACCTCGGGCGTCTTCCCAGCCTCTGCAGTGGCCCAGGGCTCTC
AGCTGCTTGTCCACTCTGTGGATCGAATGGTCAACACTACCTTCATCTGTACAGCCACCAACGCTGTGGG
GACAGGCCGTGCTGAGCAGGTCATCCTGGTGCGAGACACCCCCCAGGCCTCCCGAGATGTGGGTCCGCTG
GTGTGGGGGGCCGTGGGGGGAACATTGCTGGTGCTACTCCTGGCTGGGGGGTTCCTGGCCTTGATCCTGC
TGAGGGGGAGGAGGAGGCGGAAGAGCCCTGGAGGAGGAGGAAATGATGGCGACAGAGGATCCTACGATCC
AAAGACTCAGGTGTTTGGGAACGGGGGTCCTGTCTTCTGGAGGTCAGCATCCCCTGAGCCCATGAGGCCA
GATGGCAGGGAGGAAGATGAGGAGGAGGAGGAAGAAATGAAGGCAGAGGAAGGTCTCATGCTACCTCCAC
ACGAGTCACCTAAGGACGACATGGAGTCCCATCTGGATGGCTCCCTCATCTCTCGGCGGGCAGTTTACGT
GTGA

Translation (467 aa):
MARAAVLPPSRLSPTLPLLPLLLLLLQETGAQDVRVRVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQ
RLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVEDEGNYTCEFATFPNGT
RRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTI
ISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYPPEVSISGYDDNWYLGRSEAILTCDVRSNP
EPTDYDWSTTSGVFPASAVAQGSQLLVHSVDRMVNTTFICTATNAVGTGRAEQVILVRDTPQASRDVGPL
VWGAVGGTLLVLLLAGGFLALILLRGRRRRKSPGGGGNDGDRGSYDPKTQVFGNGGPVFWRSASPEPMRP
DGREEDEEEEEEMKAEEGLMLPPHESPKDDMESHLDGSLISRRAVYV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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