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Report for CCDS57550.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57550.2 Public Mus musculus 7 Mrgpra9 23 108 98 CCDS HistoryNCBI Gene:668725Re-query CCDS DB by CCDS ID:57550.2Re-query CCDS DB by GeneID:668725See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 57550.1
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 57550.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179005.2 ENSMUSP00000136396.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179005.2Link to Ensembl Protein Viewer:ENSMUSP00000136396.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000179005Re-query CCDS DB by Protein ID:ENSMUSP00000136396
Original member Current member NCBI NM_001288801.2 NP_001275730.1 Accepted alive Link to Nucleotide Sequence:NM_001288801.2Link to Protein Sequence:NP_001275730.1Re-query CCDS DB by Nucleotide ID:NM_001288801Re-query CCDS DB by Protein ID:NP_001275730Link to BLAST:NP_001275730.1

Chromosomal Locations for CCDS 57550.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 47234919 47235906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47252785 47252795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGGGGAAAGCAGCACCAGTGCAGGGTTTCTGGCCCTAAACATCTCAGCCTCCACAATGGCACTCACAA
CAACAAATCCAATGGACGAAACCATCCCTGGAAGTACCAGCATCAAGATTCTGATCCCAAACTTGATGAT
CATCATCTTTGGACTGGTCGGGCTGACAGGAAACGCCATTGTGTTCTGGCTCCTGGGCTTCCACTTGCGC
AGGAATGCCTTCTCAGTCTACATCCTAAACTTGGCCCTGGCTGACTTCCTCTTCCTCCTCTGTCGCATCA
TAGCTTCCACGCAGAAACTTCTCACGTTCTCCTCACCCAACATTACCTTTCTCATTTGCCTTTACACCTT
CAGGGTGATTCTCTACATCGCAGGCCTGAGCATGCTCACTGCCATCAGCATTGAGCGCTGCCTGTCTGTC
CTGTGCCCCATCTGGTATCGCTGCCACCGCCCAGAACACACATCAACTGTCATGTGTGCTGCAATCTGGG
TCCTGTCCCTGTTGATCTGCATTCTGAATAGGTATTTCTGCGGTTTCTTAGATACCAAATATGTAAATGA
CTATGGGTGTATGGCATCAAATTTCTTTAATGCTGCATACCTGATGTTTTTGTTTGTAGTCCTCTGTGTG
TCCAGCCTGGCTCTGCTGGCCAGGTTGTTCTGTGGCACTGGGCGGATGAAGCTTACCAGATTGTACGTGA
CCATCATGCTGACCATTTTGGTTTTTCTCCTCTGCGGGTTGCCCTGTGGCTTATACTGGTTCCTGTTATT
CTGGATTAAGAATGGTTTTGCTGTATTTGATTTTAACTTTTATCTAGCATCAACTGTCCTGAGTGCTATT
AATAGCTCTGCCAACCCCATCATTTACTTCTTCGTGGGCTCATTCAGGCATCGGTTGAAGCACCAGACCC
TCAAAATGGTTCTCCAGAGTGCACTGCAGGATACTCCTGAGACAGCTGAAAACATGGTGGAGATGTCAAG
AAGCAAAGCAGAGCCGTGA

Translation (332 aa):
MGESSTSAGFLALNISASTMALTTTNPMDETIPGSTSIKILIPNLMIIIFGLVGLTGNAIVFWLLGFHLR
RNAFSVYILNLALADFLFLLCRIIASTQKLLTFSSPNITFLICLYTFRVILYIAGLSMLTAISIERCLSV
LCPIWYRCHRPEHTSTVMCAAIWVLSLLICILNRYFCGFLDTKYVNDYGCMASNFFNAAYLMFLFVVLCV
SSLALLARLFCGTGRMKLTRLYVTIMLTILVFLLCGLPCGLYWFLLFWIKNGFAVFDFNFYLASTVLSAI
NSSANPIIYFFVGSFRHRLKHQTLKMVLQSALQDTPETAENMVEMSRSKAEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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