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Report for CCDS40062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40062.1 Public Mus musculus 7 Or51b17 23 108 98 CCDS HistoryNCBI Gene:18366Re-query CCDS DB by CCDS ID:40062.1Re-query CCDS DB by GeneID:18366See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40062.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081748.5 ENSMUSP00000080444.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081748.5Link to Ensembl Protein Viewer:ENSMUSP00000080444.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000081748Re-query CCDS DB by Protein ID:ENSMUSP00000080444
Original member Current member NCBI NM_013617.3 NP_038645.2 Accepted alive Link to Nucleotide Sequence:NM_013617.3Link to Protein Sequence:NP_038645.2Re-query CCDS DB by Nucleotide ID:NM_013617Re-query CCDS DB by Protein ID:NP_038645Link to BLAST:NP_038645.2

Chromosomal Locations for CCDS 40062.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103892810 103893733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTGGTCCAATATCAGTGCTGCCCCCTTTCTGCTGACTGGCTTCCCAGGACTGGAAGCAGCTCATCACT
GGATCTCTATCCCCTTCTTTGCCATCTATATCTCTGTGCTTCTGGGCAATGGTACACTTCTCTACCTCAT
CAAGGATGACCACAACCTCCATGAACCCATGTACTATTTCCTTGCCATGCTGGCGGGCACAGACCTCACA
GTTACACTGACTACAATGCCCACTGTAATGGCTGTTTTATGGGTGAATCATAGAGAGATAAGACACGGAG
CCTGCTTCTTACAGGCCTACATCATTCACTCCCTTTCCATTGTGGAGTCAGGTGTCTTGCTTGCCATGTC
TTATGATCGATTTGTCGCCATCTGCACACCTCTGCATTACAACTCTATCCTTACCAATTCCAGGGTTATA
GCTATAGGACTTGGGGTGTTACTGAGGGGCTTTTTGTCTCTTGTGCCCCCAATCCTGCCTCTCTTTTGGT
TCTCATATTGCCGTTCCCATGTTCTTTCTCATGCCTTCTGCCTCCACCAAGATGTCATGAAACTGGCATG
TGCTGACATTACCTTTAACCGCATATATCCAGTTGTTTTGGTTGCTCTGACTTTCTTCCTCGATGCGCTC
ATCATTGTCTTTTCCTATGTCCTCATTCTGAAGACAGTTATGGGCATTGCCTCTGGAGAGGAGAGAAAAA
AGTCTCTCAACACCTGTGTTTCACACATTAGCTGTGTCCTGGTCTTTTACATCACTGTGATTGGCCTGAC
ATTCATTCACAGGTTTGGAAAGCATGCACCCCATGTGGTGCACATTACCATGAGCTATGTCTACTTTCTC
TTTCCTCCATTTATGAACCCCATCATTTACAGCATCAAGACCAAGCAAATTCAGAGGAGCGTTCTCCGTC
TCCTATCTGTATAA

Translation (307 aa):
MWSNISAAPFLLTGFPGLEAAHHWISIPFFAIYISVLLGNGTLLYLIKDDHNLHEPMYYFLAMLAGTDLT
VTLTTMPTVMAVLWVNHREIRHGACFLQAYIIHSLSIVESGVLLAMSYDRFVAICTPLHYNSILTNSRVI
AIGLGVLLRGFLSLVPPILPLFWFSYCRSHVLSHAFCLHQDVMKLACADITFNRIYPVVLVALTFFLDAL
IIVFSYVLILKTVMGIASGEERKKSLNTCVSHISCVLVFYITVIGLTFIHRFGKHAPHVVHITMSYVYFL
FPPFMNPIIYSIKTKQIQRSVLRLLSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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