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Report for CCDS40136.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40136.2 Under review, update Mus musculus 7 Mvp 23 108 98 CCDS HistoryNCBI Gene:78388Re-query CCDS DB by CCDS ID:40136.2Re-query CCDS DB by GeneID:78388See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 40136.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 9 aa longer at the N-terminal.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 40136.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165096.8 ENSMUSP00000127250.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165096.8Link to Ensembl Protein Viewer:ENSMUSP00000127250.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165096Re-query CCDS DB by Protein ID:ENSMUSP00000127250
Original member NCBI NM_080638.3 NP_542369.2 Updated not alive Link to Nucleotide Sequence:NM_080638.3Link to Protein Sequence:NP_542369.2Re-query CCDS DB by Nucleotide ID:NM_080638Re-query CCDS DB by Protein ID:NP_542369
Current member NCBI NM_080638.4 NP_542369.3 Pending alive Link to Nucleotide Sequence:NM_080638.4Link to Protein Sequence:NP_542369.3Re-query CCDS DB by Nucleotide ID:NM_080638Re-query CCDS DB by Protein ID:NP_542369Link to BLAST:NP_542369.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542369.3 861 Q9EQK5 861 100% 0 0

Chromosomal Locations for CCDS 40136.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126986983 126987114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126987477 126987665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126988318 126988444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126988826 126988942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126989546 126989932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126992275 126992472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126992554 126992798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126993520 126993801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126995736 126995972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126996238 126996332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126998226 126998357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126998473 126998596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127001480 127001675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127001809 127001958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127014519 127014520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2613 nt):
ATGTTAGGCCGGGGCTTGGGATTCACCATGGCAACTGAAGAGGCCATCATCCGCATCCCCCCATACCACT
ACATCCATGTGCTGGACCAGAACAGTAATGTGTCCCGTGTAGAGGTTGGACCAAAGACCTACATCCGGCA
GGACAATGAGAGGGTACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTG
GCCAACCCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGTTTGACGTCACAGGACAAGTCCGGCTCCGGC
ACGCTGACCAGGAGATCCGACTAGCCCAGGACCCCTTCCCTCTGTACCCAGGGGAGCTGCTGGAAAAGGA
CATCACCCCGCTGCAGGTGGTTCTGCCCAACACTGCCCTGCATCTGAAGGCATTGCTGGACTTTGAAGAT
AAGAATGGAGACAAGGTCATGGCAGGAGACGAGTGGCTGTTTGAGGGACCTGGCACCTACATCCCACAGA
AGGAGGTGGAAGTCGTGGAGATCATTCAGGCCACAGTCATCAAACAGAACCAAGCTCTGCGGCTCAGGGC
CCGCAAGGAATGCTTTGACCGGGATGGCAAGGAACGGGTGACAGGTGAGGAGTGGCTGGTCCGATCCGTC
GGTGCTTATCTCCCCGCTGTCTTTGAAGAGGTGCTGGATCTGGTGGACGCTGTGATCCTTACAGAAAAGA
CGGCCCTGCACCTCCGGGCTCGGCAAAACTTCAAGGACCTTCGGGGAGTGGCCCACCGCACTGGGGAGGA
ATGGCTAGTGACGGTGCAGGACACGGAAGCCCATGTCCCGGATGTCTATGAGGAGGTGCTGGGGGTGGTG
CCCATCACCACCCTGGGACCTCGACACTACTGTGTTATCCTTGACCCAATGGGACCAGATGGCAAGAACC
AGCTGGGACAAAAGCGTGTTGTCAAGGGAGAGAAGTCCTTTTTCCTCCAGCCAGGAGAAAGGCTGGAACG
AGGCATCCAGGATGTGTACGTGCTGTCAGAGCAGCAGGGGCTCCTGCTGAAGGCGCTGCAGCCCCTGGAG
GAGGGGGAGGGGGAGGAGAAGGTCGCCCACCAGGCTGGAGACCGCTGGCTCATCCGAGGGCCCCTGGAGT
ATGTGCCATCTGCCAAAGTGGAGGTGGTGGAAGAGCGTCAGGCTATCCCTCTGGACCAAAATGAGGGCAT
CTATGTTCAGGATGTCAAGACGGGAAAGGTGCGGGCTGTGATTGGAAGCACCTACATGCTGACTCAGGAT
GAAGTCCTGTGGGAAAAGGAACTGCCTTCTGGAGTGGAGGAGCTGCTGAACTTGGGGCATGACCCTCTGG
CTGACAGGGGTCAGAAGGGCACAGCCAAGGTCCTTCAGCCCTCAGCTGCAAGGAACAAGACCCGAGTGGT
CAGCTACCGTGTCCCCCACAACGCAGCGGTGCAGGTGTACGACTACAGAGCCAAGAGAGCCCGTGTGGTC
TTTGGGCCTGAGCTAGTGTCACTGGATCCCGAGGAGCAGTTCACAGTGTTGTCCCTTTCTGCTGGGCGAC
CCAAGCGTCCTCATGCCCGTCGTGCACTCTGCCTGCTGCTGGGACCTGATTTCTTCACTGACGTCATCAC
CATCGAAACTGCAGATCATGCCAGGCTGCAGCTGCAGCTGGCTTACAACTGGCACTTTGAACTGAAGAAC
CGGAATGATCCTGAAGAGACAGCCAAGCTTTTCTCTGTGCCTGACTTTGTGGGCGACGCCTGCAAGGCCA
TTGCGTCCCGAGTCCGGGGGGCTGTAGCCTCGGTCACATTTGATGACTTCCATAAGAACTCAGCACGTAT
CATTCGCATGGCTGTTTTTGGCTTTGAGATGTCCGAAGATGCCGGTCCTGATGGCGCACTCCTGCCCAGG
GCTCGAGACCGGGCCGTCTTTCCCCAAAATGGGCTGGTTGTGAGCAGTGTGGACGTGCAGTCAGTGGAGC
CTGTGGACCAGAGGACCCGGGATGCCCTGCAGCGCAGTGTCCAGCTAGCCATCGAAATTACAACCAACTC
CCAGGAGGCAGCAGCCAAGCACGAGGCTCAGAGACTGGAGCAGGAAGCCCGTGGTCGGCTTGAGAGGCAG
AAGATCTTGGACCAGTCAGAAGCTGAAAAAGCCCGCAAGGAACTTTTGGAGCTTGAGGCGATGAGCATGG
CTGTGGAGAGCACTGGTAATGCCAAGGCGGAGGCTGAGTCCCGGGCAGAGGCAGCGAGGATTGAGGGAGA
AGGCTCTGTGCTGCAGGCCAAGCTAAAGGCGCAGGCGTTAGCCATTGAGACGGAGGCTGAGCTGGAGCGA
GTGAAGAAAGTGCGAGAGATGGAGCTGATCTACTCCCGGGCCCAGCTGGAGCTGGAGGTGAGCAAGGCAC
AGCAGCTCGCCGACGTGGAGGCAAAGAAGTTCAAGGAGATGACAGAGGCACTGGGCCCCGGAACCATCAG
GGACTTGGCTGTGGCCGGGCCAGAGATGCAGGTGAAACTTCTTCAGTCCCTGGGCCTGAAATCCACTCTC
ATCACAGATGGCTCGTCCCCCATCAACCTCTTCAACACAGCCTTCGGCTTGCTGGGGCTGGGGTCTGACG
GTCAGCCACCTGTACAAAAGTGA

Translation (870 aa):
MLGRGLGFTMATEEAIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPVRMVTVPPRHYCIV
ANPVSRDAQSSVLFDVTGQVRLRHADQEIRLAQDPFPLYPGELLEKDITPLQVVLPNTALHLKALLDFED
KNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECFDRDGKERVTGEEWLVRSV
GAYLPAVFEEVLDLVDAVILTEKTALHLRARQNFKDLRGVAHRTGEEWLVTVQDTEAHVPDVYEEVLGVV
PITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLE
EGEGEEKVAHQAGDRWLIRGPLEYVPSAKVEVVEERQAIPLDQNEGIYVQDVKTGKVRAVIGSTYMLTQD
EVLWEKELPSGVEELLNLGHDPLADRGQKGTAKVLQPSAARNKTRVVSYRVPHNAAVQVYDYRAKRARVV
FGPELVSLDPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFELKN
RNDPEETAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDAGPDGALLPR
ARDRAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQ
KILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER
VKKVREMELIYSRAQLELEVSKAQQLADVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTL
ITDGSSPINLFNTAFGLLGLGSDGQPPVQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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