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Report for CCDS22320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22320.1 Public Mus musculus 8 Aadat 23 108 98 CCDS HistoryNCBI Gene:23923Re-query CCDS DB by CCDS ID:22320.1Re-query CCDS DB by GeneID:23923See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079472.3 ENSMUSP00000078436.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079472.3Link to Ensembl Protein Viewer:ENSMUSP00000078436.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000079472Re-query CCDS DB by Protein ID:ENSMUSP00000078436
Original member Current member NCBI NM_011834.2 NP_035964.1 Accepted alive Link to Nucleotide Sequence:NM_011834.2Link to Protein Sequence:NP_035964.1Re-query CCDS DB by Nucleotide ID:NM_011834Re-query CCDS DB by Protein ID:NP_035964Link to BLAST:NP_035964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035964.1 425 Q9WVM8 425 100% 0 0

Chromosomal Locations for CCDS 22320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 60506213 60506279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60507089 60507257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60515980 60516112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60518532 60518606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60526571 60526780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60529376 60529441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60531666 60531748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60532199 60532295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60534574 60534635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60535727 60535791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60540055 60540161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60543522 60543623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60545223 60545264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGAATTACTCACGGTTCCTCACTGCAACGAGCCTGGCCAGAAAGCCATCTCCCATCAGAACTACAGCGG
ACATACTGAGCAAAGCACCAAAAACCCTCATCTCCCTGGCTCCTGGATCTCCAAACCCGAGCATGTTCCC
CTTTAAGTCAGCTGCCTTCACTGTGGAAAACGGAAGCACCATCCGGTTTGAAGACGACTTGATCAAAAGG
GCCCTCCAATACTCTCCAAGCTATGGAATTCCAGAACTTCTGTCCTGGCTAAAACAGTTTCAAGTAAAAT
TGCATAATCCCCCCACTGTCAACTACCCACCCAATCAAGGACAGATGGATCTCTGCATCACATCTGGCTG
CCAAGATGGTCTCTGTAAGGCATTTGAAATGCTCATCAATCCTGGAGACACTATCCTGGTCAATGAACCA
CTGTTTCCAGGAACCCTTTATGCTATGAAACCACTAGGCTGCAACATTATTAATGTCCCCAGTGATGAGC
ATGGGATTATTCCAGAGGGTCTCAAAAAAATCCTTTCCCAGTGGAAACCAGAAGATTCCAAGGATCCCAC
AAAAAAGACTCCAAAATTTCTGTATACTGTACCAAATGGCAACAACCCTACAGGCAACTCCTTGACAGGT
GACCGCAAGAAGGAAATCTATGAGCTTGCAAGAAAATATGATTTCCTCATAATAGAAGATGACCCTTACT
ATTTTCTTCAGTTTAGCAAGCCTTGGGAGCCAACTTTTCTCTCCATGGATGTTGATGGGAGAGTCATCAG
AGCTGACACCTTTTCAAAAACCGTCTCCTCAGGGTTGAGAGTAGGGTTTATGACTGGCCCTAAGACCTTG
ATACAGAATATTGTTCTCCACACACAAGTCTCATCAGTACATGCCTGTACTCTCTCACAGCTCATGATAC
TACAGCTTCTACACCAATGGGGAGAAGAGGGTTTCCTGGCTCATATTGACAGAACTATTGATTTCTACAA
GAACCAGAGGGATTCCATATTGGCAGCTGCAGACAAGTGGTTACGTGGCTTGGCAGAGTGGCATGTTCCC
AAAGCTGGCATGTTTCTATGGATTAAAGTTAAGGGAATCTCCGATACAAAACAACTGATTGAAGAAAAGG
CTATTGAAAGAGAGGTCTTACTTGTTCCTGGAAATGGTTTCTTCATTGATGGTTCAGCTCCTACCTCCTT
CTTCAGAGCATCCTTCTCTCTGGCTACTCCAGCACAGATGGATACAGCCTTCCAGAGATTGGCCCAACTG
ATAAAAGAGTCTTTATGA

Translation (425 aa):
MNYSRFLTATSLARKPSPIRTTADILSKAPKTLISLAPGSPNPSMFPFKSAAFTVENGSTIRFEDDLIKR
ALQYSPSYGIPELLSWLKQFQVKLHNPPTVNYPPNQGQMDLCITSGCQDGLCKAFEMLINPGDTILVNEP
LFPGTLYAMKPLGCNIINVPSDEHGIIPEGLKKILSQWKPEDSKDPTKKTPKFLYTVPNGNNPTGNSLTG
DRKKEIYELARKYDFLIIEDDPYYFLQFSKPWEPTFLSMDVDGRVIRADTFSKTVSSGLRVGFMTGPKTL
IQNIVLHTQVSSVHACTLSQLMILQLLHQWGEEGFLAHIDRTIDFYKNQRDSILAAADKWLRGLAEWHVP
KAGMFLWIKVKGISDTKQLIEEKAIEREVLLVPGNGFFIDGSAPTSFFRASFSLATPAQMDTAFQRLAQL
IKESL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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