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Report for CCDS52567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52567.1 Public Mus musculus 8 Gatad2a 23 108 98 CCDS HistoryNCBI Gene:234366Re-query CCDS DB by CCDS ID:52567.1Re-query CCDS DB by GeneID:234366See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116463.3 ENSMUSP00000112164.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116463.3Link to Ensembl Protein Viewer:ENSMUSP00000112164.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116463Re-query CCDS DB by Protein ID:ENSMUSP00000112164
Original member Current member EBI ENSMUST00000212478.1 ENSMUSP00000148474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212478.1Link to Ensembl Protein Viewer:ENSMUSP00000148474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212478Re-query CCDS DB by Protein ID:ENSMUSP00000148474
Original member Current member NCBI NM_001113346.1 NP_001106817.1 Accepted alive Link to Nucleotide Sequence:NM_001113346.1Link to Protein Sequence:NP_001106817.1Re-query CCDS DB by Nucleotide ID:NM_001113346Re-query CCDS DB by Protein ID:NP_001106817Link to BLAST:NP_001106817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106817.1 629 Q8CHY6 629 100% 0 0

Chromosomal Locations for CCDS 52567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69909844 69909974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69911677 69911869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69912164 69912238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69912923 69913224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69914519 69914798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69916284 69916448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69916569 69916700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69917443 69917532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69917723 69917854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69917946 69918078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69935779 69936035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGAGTGAAGAAGCATGCCGAACCCGCAGTCAGAAGCGCACCCTTGAACCTGACCTAACGGAGGATGATG
TGGAGAACAAGAAAATGAAAATGGAGAAAGGGTCATCAGAGCTGACAGTGGACGGAGACAGCAGGGTGAT
GCCAGAGCCGAGTGCAGGCTCAGCCCAGGGGTTGCTGAGGACAACAGAGGCCATGGGCACAGGATCTGGC
GAGGGGCTGTTAGGAGACGGGCCTGTGGACATGCGCACTTCACACAGTGACATGAAGTCTGAGAAGAGAC
CTCCCTCGCCTGATGTGATTGTGCTCTCTGACAGTGAGCAGCCATCGAGCCCAAGGGTGAATGGCCTGAC
CACAGTAGCCTTGAAAGACACCAGCACTGAGGCGCTCTTGAAAAGCAGCCCAGAAGAACGAGAGCGGATG
ATCAAGCAGCTGAAGGAGGAGCTGAGGCTAGAGGAAGCAAAACTGGTCTTGTTGAAGAAGCTGCGGCAGA
GTCAGATACAGAAGGAAGCCACCGCACAGAAGCCTACAGCTTCCTCAGGGAGCACTGTGACCACCCCTCC
CCCACTCGTGCGGGGTACCCAGAACATTCCTGCTGGCAAGACCTCACTTCAGACCTCCTCCACTCGAATA
CCCGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGG
CCAGCTCTCAAGTAGTCATGCCACCGCTTGTCAGGGGGGCCCAGATTCACAACATCAGACAGCATTCCTC
TACGGGGCCACCACCCCTCCTCCTGGCCCCCCGTGCCTCAGTGCCCAGCATGCAGATTCAGGGACAGAGG
ATCATCCAGCAGGGACTTATCCGTGTCGCCAATGTCCCCAACACCAGTCTGCTTGTCAACATCCCTCAGC
CTACTGCAGCCTCCATGAAGGGGACAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCAGTGTGGC
TTCTGTGGTTGCATCTGCTGAGTCTCCAGCTAGCCGACAGGCGGCTGCCAAGCTAGCACTGCGCAAGCAG
CTGGAGAAGACACTGCTGGAGATCCCCCCACCCAAGCCCCCTGCCCCAGAGATGAACTTCTTGCCCAGTG
CTGCCAATAATGAGTTTATCTACCTGGTCGGCCTGGAGGAGGTGGTGCAGAACCTGCTGGAGACACAAGC
AGGCAGGATTTCTGCCACTGCAGCAGCTGCTGTGTTATCCCGGGAGCCCTACATGTGTGTGCAGTGTAAG
ACAGACTTCACATGCCGCTGGCGAGAGAAGGGTGGAGCCGTTATGTGTGAGAACTGCATGACATCCAACC
AAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTTGTGAAGGCTCTACAGCAAGA
GCAGGAGATGGAGCAGCGCCTGCTGCAGCAGGGTGTGGGTACTGCCAGCATCAAGGCTGAGCCTGCAGCT
CCACATCCCACGCTGAAGCAGGTCATAAAGCCCCGACGTAAGTTGGCGTTCCGCTCAGGAGAGGCCCGTG
TCTGGAATAACGGGTCCTCACTACAGGCTTCCAGCCAGCTGTCCCGAGGCTCAGCCACAGCACCTCGTGG
TGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGCTACGGCCCTGGTAAGCAGG
ACTGGCAGACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTC
TGAGCACAGGTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACACAAGACCTCCTCGGCTGTGGA
TCGACAGCGAGAATACCTCCTGGACATGATTCCTCCACGCTCCATCCCCCAATCAGCCACATGGAAATAG

Translation (629 aa):
MSEEACRTRSQKRTLEPDLTEDDVENKKMKMEKGSSELTVDGDSRVMPEPSAGSAQGLLRTTEAMGTGSG
EGLLGDGPVDMRTSHSDMKSEKRPPSPDVIVLSDSEQPSSPRVNGLTTVALKDTSTEALLKSSPEERERM
IKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPTASSGSTVTTPPPLVRGTQNIPAGKTSLQTSSTRI
PGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQR
IIQQGLIRVANVPNTSLLVNIPQPTAASMKGTAVASAQANSTPTSVASVVASAESPASRQAAAKLALRKQ
LEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRISATAAAAVLSREPYMCVQCK
TDFTCRWREKGGAVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTASIKAEPAA
PHPTLKQVIKPRRKLAFRSGEARVWNNGSSLQASSQLSRGSATAPRGVLHTFSQSPKLQNAASATALVSR
TGRHSERVVGTGKGTASNWKKTPLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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