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Report for CCDS90590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90590.1 Public Mus musculus 9 Uaca 23 108 98 CCDS HistoryNCBI Gene:72565Re-query CCDS DB by CCDS ID:90590.1Re-query CCDS DB by GeneID:72565See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214354.1 ENSMUSP00000151172.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214354.1Link to Ensembl Protein Viewer:ENSMUSP00000151172.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214354Re-query CCDS DB by Protein ID:ENSMUSP00000151172
Original member Current member NCBI NM_001357407.1 NP_001344336.1 Accepted alive Link to Nucleotide Sequence:NM_001357407.1Link to Protein Sequence:NP_001344336.1Re-query CCDS DB by Nucleotide ID:NM_001357407Re-query CCDS DB by Protein ID:NP_001344336Link to BLAST:NP_001344336.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344336.1 1411 Q8CGB3-1 1411 99.7165% 0 4

Chromosomal Locations for CCDS 90590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 60794609 60794692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60840840 60840973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60845993 60846081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60848622 60848686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60849445 60849502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60850130 60850200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60850301 60850407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60854316 60854497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60856198 60856235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60859140 60859217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60861052 60861159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60863391 60863423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60863600 60863698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60866365 60866401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60867432 60867484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60869575 60872283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60874033 60874185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60876362 60876427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60880174 60880245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4236 nt):
ATGAAGAGCCTCAAGTCCCGACTGTGGAAGCAGGACGCGCCCGGCCCCACGTCACCCTCATCGCCCACCG
CGGTGGCCAGCACGCAATCAGCGGAGTGGAATAAGTACGATGACCGGTTGATGAAGGCTGCTGAAAGAGG
GGATGTGGAGAAAGTGTCCTCCATCCTTGCCAAAAAGGGCGTCCATCCCGGCAAGCTAGATGTGGAAGGC
AGATCGGCCTTCCACGTCGTGGCATCCAAAGGGAATCTGGAGTGTCTGAATGCCATCCTTACGCATGGCA
TTGATGTTGCAACCAGGGACAGTGCAGGGAGGAATGCGCTTCACCTGGCAGCTAAGTACGGACACGCGTT
GTGCCTGCAGAAACTTCTACAGTACAACTGTCCCACTGAGCATGTGGACCTTCAAGGAAGAACTGCCCTT
CATGATGCAGCCATGGCAGACTGTCCTTCCAGCATCCAGCTGCTCTGTGACCACGGGGCCTCCGTGAATG
CCAAAGATATAGACGGGCGGACACCACTTGTTCTGGCGACTCAGATGTGCAGGCCGACAATTTGTCAGTT
GCTGATAGACAGAGGGGCAGATGTCAATTCCAGAGACAAACAAAACAGGACAGCTCTGATGCTGGGCTGC
GAGTACGGTTGCAGAGATGCCGTAGAAGTCCTCGTGAAAAATGGTGCCGACCTGACCTTGCTGGATGCCC
TTGGCCACGACAGTTCTTACTACGCTAGAATTGGTGACAACCTGGACATCCTGAACCTACTGAAGACGGC
GTCAGAAAACACCAACAAAGGGCGAGAACTTTGGAGGAAAGGACCGCCTTTGCAGCAGCGGAATTTGTCA
CACACTCAGGACGAAGGAAGCGTGAAGTCAACTCAGAGGGAACAGAGGGAACCCCACAGCTTTCAGGATC
TAGAGATTGAAAATGAAGATTTAAGAGAGAAGTTGAGGAAGATTCAGCAAGAACAAAGAATCCTCCTGGA
TAAAGTCAATGGCTTACAGTTACAGCTGAATGAGGAAGTAATGGTCGCAGATGATCTGGAAAGCGAGAGA
GAAAAGCTGAAGTCCCTTTTGGCGGCTAAAGAAAAGCAACACGAAGAAAGCTTAAGAACCATCGAGGCCC
TGAAAAACAGATTTAAATATTTTGAGAGTGATCACCCAGGACCCGGAAGTTACCCGAGTAACCGAAAAGA
AGACATGCTGCATAAACAAGGTCAAATGTACACGACAGAGCCACAGTGTGCATCACCGGGTATACCTCCC
CATATGCATAGCAGGTCTATGCTAAGGCCTCTGGAGTTGTCTTTACCCAGTCAGACCTCATACTCTGAAA
ATGAGATTTTAAAGAAAGAATTGGAAACCTTGCGAACTTACTATGACTCGGCAAAACAGGACCGACTGAA
GTTCCAAAACGAACTGGCTCACAAGGTGGCGGAGTGCAAAGCCTTAGCTCTGGAGTGCGAGAGAGTCAAG
GAAGACTCGGACGAACAGATCAAGCAGCTGGAAGATGCCCTCAAAGACGTGCAGAAGAGGATGTATGAGT
CCGAAGGGAAAGTCAAACAAATGCAGACCCACTTCCTCGCCCTCAAAGAGCACCTGACCAACGAAGCGGC
CACAGGGAGCCACCGCATCATCGAGGAACTGAGGGAGCAGCTGAAAGACCTGAAAGGCAAATATGAAGGC
GCTTCGGCCGAGGTAGGCAAGCTGCGGAGCCAGATCAAACAGAGCGAGATGCTGGTGGGAGAGTTCAAGA
GAGACGAGGGCAGGCTGGTGGAAGAGAATAAGCGATTGCAGAAGGAATGCGGCACATGTGAAGTCGAGCT
GGAGAGGAGGGGGCGACGGGTCGTGGAACTGGAGGGCCAGCTGAAGGAGCTGGGGGCTAAGCTGGCCCTT
TCTGTCCCCACAGAGAAATTTGAAAGCATGAAGAGCTCATTATCCAATGACATCAATGAGAAAGTGAAAA
GGCTGGCGGAGGTGGGGCGGGACTATGAAAGCGCTCAGGGGGAAATTCGACAGCTGAAGAGGGACCTAGA
GAGTGTCAGGGCCCAGCATATCAGGCCGGAGGAGCATGAACAGCTCAGAAGCAGGTTGGAGCAGAAGTCG
GGAGAGCTGGGGAAGAAGGTGTCAGAGCTGACCCTCAAAAACCAGACGCTGCAGAAAGACGTGGAAAAAC
TCCACGCCGACAACAAACTTCTCAACCAGCAGGTGCACAGCCTCACGGTGGAGATGAAAACGCGCTACGT
GCCTCTAAGGGTCAGCGAAGAGATGAAGAAGTCGCATGACGTAAACGTGGAGGATTTGAATAAGAAGCTT
TCGGAGGCAACACAGAGATACACAGAGAAGAAGCAGGAAGCAGAGAGACTGCTGGCGGAGAACGATAAGT
TGACTAAGAATGTCAGCCGCCTGGAAGCTGTGTTTGTAGCTCCCGAGAAACATGAAAAGGAGCTAATGGG
TCTGAAATCCAATATCGCAGAACTGAAAAAGCAACTGTCTGAGCTTAATAAAAAATGTGGTGAGGGTCAG
GAGAAAATACGTGCACTTATGTCTGAAAACAGCAGCTTGAAAAAGACTCTGAGTAGCCAGTATGTGCCTG
CCAAGACCCACGAGGAGGTGAAGGCCTCCCTGAACAGCACCGTGGAGAAAACCAACAGAGCCTTACTGGA
GGCGAAGAAAAGGTTTGACGACACGAGCCAGGAGGTTTCAAAACTAAGAGATGAGAACGAAGTATTGAGG
AGGAACCTGGAGAACGTTCAGAATCAGATGAAGGCTGACTATGTGAGCCTGGAGGAGCACTCGAGAAGGA
TGAGCACGGTGAGCCAGAGTCTGAAGGAGGCACAGGAGGCCAACGCTGCCATCCTGGCCGACCACCGCCA
GGGCCAGGAGGAGATCGTCTCGCTCCACGCTGAAATCAAGGCCCAGAAAAAGGAGCTGGACACCATCCAG
GAGTGCATCAAGCTGAAGTACGCGCCCCTTGCCCGCTTGGAAGAGTGTGAGCGCAAGTTCAAGGCCACAG
AGAAAGGACTGAAGGAGCAGTTATCAGAGCAGACGCACAAGTGTCGCCAGAGGGACGAAGAGGTCAAGAA
GGGCAAGCAAGAGAACGAGAGGCTGCGGGCGGACCTGGCCGCCCTTCAGAAGGAGCTGCAGGATAGGAAC
GCTCTGGCGGAAGAGGCCCGGGAAGCAGAAAGAGCGTTGAGTGGCAAGGCAGACGAGCTCAGCAAGCAGC
TGAAGGACCTGTCCCAAAAGTACAGCGACGTGAAGAGCGAGAGAGAGAAGCTGGTAGAAGAAAAGGCCAA
GCAGGCCTCCGAGATCCTGGCAGCCCAAAATCTTCTGCAGAAGCAGCCGGTCCCGCTGGAGCAGGTGGAG
GCTCTGAAAAAATCTCTCAACGGCACCATTGAGCAGTTGAAGGAGGAGCTGAGGAGTAAGCAGAGGTGTC
TGGAGCGCGAGCAGCAGACGGTGAGCCAGCTTCAGCAGCTGCTGGAGAATCAGAAGAACTCCTCGGTGAC
CCTGGCGGAGCACCTGAAGCTAAAGGAAGCCCTCGAGAAAGAGGTTGGGATCATGAAAGCCAGCCTGAGA
GAAAAGGAAGAGGAAAGCCAGAAGAAAACCAAGGAAGTCTCCAAACTCCAGACGGAGGTTCAGACCACCA
AGCAGGCGCTGAAGAACTTAGAGACCAGAGAGGTCGTCGACATGTCGAAGTACAAAGCCACCAAGAACGA
CTTGGAGACCCAGATTTCCAACTTAAATGACAAACTGGCCAGCCTGAACAGGAAGTACGACCAAGCGTGT
GAGGAGAAGGTCTCTGCCAAGGACGAGAAGGAGCTGCTCCACCTGAGCATCGAGCAGGAGATCAGGGACC
AGAAGGAGCGCTGTGACAAGTCCCTGACGACCATCATGGAACTGCAGCAGAGGATCCAGGAGTCCGCCAA
GCAGATCGAAGCCAAGGACAATAAGATAACTGAACTTCTGAATGATGTCGAAAGACTAAAGCAGGCGCTC
AACGGCCTTTCTCAGCTCACCTACAGCAGTGGCAGCCCCACCAAGCGGCAGAGCCAGCTGGTGGATACTC
TGCAGCAGCGAGTGAGGGATCTGCAGCAGCAGCTGGCTGATGCTGACAGACAGCACCAAGAAGTTATCGC
TATCTACCGGACACACCTCCTCAGTGCCGCACAGGGCCACATGGATGAAGATGTGCAGGCAGCCCTACTG
CAGATCATACAGATGCGACAAGGCCTTGTGTGCTAG

Translation (1411 aa):
MKSLKSRLWKQDAPGPTSPSSPTAVASTQSAEWNKYDDRLMKAAERGDVEKVSSILAKKGVHPGKLDVEG
RSAFHVVASKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTAL
HDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGC
EYGCRDAVEVLVKNGADLTLLDALGHDSSYYARIGDNLDILNLLKTASENTNKGRELWRKGPPLQQRNLS
HTQDEGSVKSTQREQREPHSFQDLEIENEDLREKLRKIQQEQRILLDKVNGLQLQLNEEVMVADDLESER
EKLKSLLAAKEKQHEESLRTIEALKNRFKYFESDHPGPGSYPSNRKEDMLHKQGQMYTTEPQCASPGIPP
HMHSRSMLRPLELSLPSQTSYSENEILKKELETLRTYYDSAKQDRLKFQNELAHKVAECKALALECERVK
EDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTNEAATGSHRIIEELREQLKDLKGKYEG
ASAEVGKLRSQIKQSEMLVGEFKRDEGRLVEENKRLQKECGTCEVELERRGRRVVELEGQLKELGAKLAL
SVPTEKFESMKSSLSNDINEKVKRLAEVGRDYESAQGEIRQLKRDLESVRAQHIRPEEHEQLRSRLEQKS
GELGKKVSELTLKNQTLQKDVEKLHADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKSHDVNVEDLNKKL
SEATQRYTEKKQEAERLLAENDKLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKKQLSELNKKCGEGQ
EKIRALMSENSSLKKTLSSQYVPAKTHEEVKASLNSTVEKTNRALLEAKKRFDDTSQEVSKLRDENEVLR
RNLENVQNQMKADYVSLEEHSRRMSTVSQSLKEAQEANAAILADHRQGQEEIVSLHAEIKAQKKELDTIQ
ECIKLKYAPLARLEECERKFKATEKGLKEQLSEQTHKCRQRDEEVKKGKQENERLRADLAALQKELQDRN
ALAEEAREAERALSGKADELSKQLKDLSQKYSDVKSEREKLVEEKAKQASEILAAQNLLQKQPVPLEQVE
ALKKSLNGTIEQLKEELRSKQRCLEREQQTVSQLQQLLENQKNSSVTLAEHLKLKEALEKEVGIMKASLR
EKEEESQKKTKEVSKLQTEVQTTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQAC
EEKVSAKDEKELLHLSIEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQAL
NGLSQLTYSSGSPTKRQSQLVDTLQQRVRDLQQQLADADRQHQEVIAIYRTHLLSAAQGHMDEDVQAALL
QIIQMRQGLVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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