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Report for CCDS23259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23259.1 Public Mus musculus 9 Uaca 23 108 98 CCDS HistoryNCBI Gene:72565Re-query CCDS DB by CCDS ID:23259.1Re-query CCDS DB by GeneID:72565See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050183.6 ENSMUSP00000062047.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050183.6Link to Ensembl Protein Viewer:ENSMUSP00000062047.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050183Re-query CCDS DB by Protein ID:ENSMUSP00000062047
Original member Current member NCBI NM_028283.3 NP_082559.1 Accepted alive Link to Nucleotide Sequence:NM_028283.3Link to Protein Sequence:NP_082559.1Re-query CCDS DB by Nucleotide ID:NM_028283Re-query CCDS DB by Protein ID:NP_082559Link to BLAST:NP_082559.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082559.1 1413 Q8CGB3-3 1413 99.7169% 0 4

Chromosomal Locations for CCDS 23259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 60794609 60794692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60840840 60840973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60845993 60846081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60848622 60848686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60849445 60849502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60850130 60850200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60850301 60850407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60854316 60854503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60856198 60856235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60859140 60859217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60861052 60861159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60863391 60863423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60863600 60863698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60866365 60866401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60867432 60867484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60869575 60872283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60874033 60874185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60876362 60876427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60880174 60880245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4242 nt):
ATGAAGAGCCTCAAGTCCCGACTGTGGAAGCAGGACGCGCCCGGCCCCACGTCACCCTCATCGCCCACCG
CGGTGGCCAGCACGCAATCAGCGGAGTGGAATAAGTACGATGACCGGTTGATGAAGGCTGCTGAAAGAGG
GGATGTGGAGAAAGTGTCCTCCATCCTTGCCAAAAAGGGCGTCCATCCCGGCAAGCTAGATGTGGAAGGC
AGATCGGCCTTCCACGTCGTGGCATCCAAAGGGAATCTGGAGTGTCTGAATGCCATCCTTACGCATGGCA
TTGATGTTGCAACCAGGGACAGTGCAGGGAGGAATGCGCTTCACCTGGCAGCTAAGTACGGACACGCGTT
GTGCCTGCAGAAACTTCTACAGTACAACTGTCCCACTGAGCATGTGGACCTTCAAGGAAGAACTGCCCTT
CATGATGCAGCCATGGCAGACTGTCCTTCCAGCATCCAGCTGCTCTGTGACCACGGGGCCTCCGTGAATG
CCAAAGATATAGACGGGCGGACACCACTTGTTCTGGCGACTCAGATGTGCAGGCCGACAATTTGTCAGTT
GCTGATAGACAGAGGGGCAGATGTCAATTCCAGAGACAAACAAAACAGGACAGCTCTGATGCTGGGCTGC
GAGTACGGTTGCAGAGATGCCGTAGAAGTCCTCGTGAAAAATGGTGCCGACCTGACCTTGCTGGATGCCC
TTGGCCACGACAGTTCTTACTACGCTAGAATTGGTGACAACCTGGACATCCTGAACCTACTGAAGACGGC
GTCAGAAAACACCAACAAAGGTGGCGGGCGAGAACTTTGGAGGAAAGGACCGCCTTTGCAGCAGCGGAAT
TTGTCACACACTCAGGACGAAGGAAGCGTGAAGTCAACTCAGAGGGAACAGAGGGAACCCCACAGCTTTC
AGGATCTAGAGATTGAAAATGAAGATTTAAGAGAGAAGTTGAGGAAGATTCAGCAAGAACAAAGAATCCT
CCTGGATAAAGTCAATGGCTTACAGTTACAGCTGAATGAGGAAGTAATGGTCGCAGATGATCTGGAAAGC
GAGAGAGAAAAGCTGAAGTCCCTTTTGGCGGCTAAAGAAAAGCAACACGAAGAAAGCTTAAGAACCATCG
AGGCCCTGAAAAACAGATTTAAATATTTTGAGAGTGATCACCCAGGACCCGGAAGTTACCCGAGTAACCG
AAAAGAAGACATGCTGCATAAACAAGGTCAAATGTACACGACAGAGCCACAGTGTGCATCACCGGGTATA
CCTCCCCATATGCATAGCAGGTCTATGCTAAGGCCTCTGGAGTTGTCTTTACCCAGTCAGACCTCATACT
CTGAAAATGAGATTTTAAAGAAAGAATTGGAAACCTTGCGAACTTACTATGACTCGGCAAAACAGGACCG
ACTGAAGTTCCAAAACGAACTGGCTCACAAGGTGGCGGAGTGCAAAGCCTTAGCTCTGGAGTGCGAGAGA
GTCAAGGAAGACTCGGACGAACAGATCAAGCAGCTGGAAGATGCCCTCAAAGACGTGCAGAAGAGGATGT
ATGAGTCCGAAGGGAAAGTCAAACAAATGCAGACCCACTTCCTCGCCCTCAAAGAGCACCTGACCAACGA
AGCGGCCACAGGGAGCCACCGCATCATCGAGGAACTGAGGGAGCAGCTGAAAGACCTGAAAGGCAAATAT
GAAGGCGCTTCGGCCGAGGTAGGCAAGCTGCGGAGCCAGATCAAACAGAGCGAGATGCTGGTGGGAGAGT
TCAAGAGAGACGAGGGCAGGCTGGTGGAAGAGAATAAGCGATTGCAGAAGGAATGCGGCACATGTGAAGT
CGAGCTGGAGAGGAGGGGGCGACGGGTCGTGGAACTGGAGGGCCAGCTGAAGGAGCTGGGGGCTAAGCTG
GCCCTTTCTGTCCCCACAGAGAAATTTGAAAGCATGAAGAGCTCATTATCCAATGACATCAATGAGAAAG
TGAAAAGGCTGGCGGAGGTGGGGCGGGACTATGAAAGCGCTCAGGGGGAAATTCGACAGCTGAAGAGGGA
CCTAGAGAGTGTCAGGGCCCAGCATATCAGGCCGGAGGAGCATGAACAGCTCAGAAGCAGGTTGGAGCAG
AAGTCGGGAGAGCTGGGGAAGAAGGTGTCAGAGCTGACCCTCAAAAACCAGACGCTGCAGAAAGACGTGG
AAAAACTCCACGCCGACAACAAACTTCTCAACCAGCAGGTGCACAGCCTCACGGTGGAGATGAAAACGCG
CTACGTGCCTCTAAGGGTCAGCGAAGAGATGAAGAAGTCGCATGACGTAAACGTGGAGGATTTGAATAAG
AAGCTTTCGGAGGCAACACAGAGATACACAGAGAAGAAGCAGGAAGCAGAGAGACTGCTGGCGGAGAACG
ATAAGTTGACTAAGAATGTCAGCCGCCTGGAAGCTGTGTTTGTAGCTCCCGAGAAACATGAAAAGGAGCT
AATGGGTCTGAAATCCAATATCGCAGAACTGAAAAAGCAACTGTCTGAGCTTAATAAAAAATGTGGTGAG
GGTCAGGAGAAAATACGTGCACTTATGTCTGAAAACAGCAGCTTGAAAAAGACTCTGAGTAGCCAGTATG
TGCCTGCCAAGACCCACGAGGAGGTGAAGGCCTCCCTGAACAGCACCGTGGAGAAAACCAACAGAGCCTT
ACTGGAGGCGAAGAAAAGGTTTGACGACACGAGCCAGGAGGTTTCAAAACTAAGAGATGAGAACGAAGTA
TTGAGGAGGAACCTGGAGAACGTTCAGAATCAGATGAAGGCTGACTATGTGAGCCTGGAGGAGCACTCGA
GAAGGATGAGCACGGTGAGCCAGAGTCTGAAGGAGGCACAGGAGGCCAACGCTGCCATCCTGGCCGACCA
CCGCCAGGGCCAGGAGGAGATCGTCTCGCTCCACGCTGAAATCAAGGCCCAGAAAAAGGAGCTGGACACC
ATCCAGGAGTGCATCAAGCTGAAGTACGCGCCCCTTGCCCGCTTGGAAGAGTGTGAGCGCAAGTTCAAGG
CCACAGAGAAAGGACTGAAGGAGCAGTTATCAGAGCAGACGCACAAGTGTCGCCAGAGGGACGAAGAGGT
CAAGAAGGGCAAGCAAGAGAACGAGAGGCTGCGGGCGGACCTGGCCGCCCTTCAGAAGGAGCTGCAGGAT
AGGAACGCTCTGGCGGAAGAGGCCCGGGAAGCAGAAAGAGCGTTGAGTGGCAAGGCAGACGAGCTCAGCA
AGCAGCTGAAGGACCTGTCCCAAAAGTACAGCGACGTGAAGAGCGAGAGAGAGAAGCTGGTAGAAGAAAA
GGCCAAGCAGGCCTCCGAGATCCTGGCAGCCCAAAATCTTCTGCAGAAGCAGCCGGTCCCGCTGGAGCAG
GTGGAGGCTCTGAAAAAATCTCTCAACGGCACCATTGAGCAGTTGAAGGAGGAGCTGAGGAGTAAGCAGA
GGTGTCTGGAGCGCGAGCAGCAGACGGTGAGCCAGCTTCAGCAGCTGCTGGAGAATCAGAAGAACTCCTC
GGTGACCCTGGCGGAGCACCTGAAGCTAAAGGAAGCCCTCGAGAAAGAGGTTGGGATCATGAAAGCCAGC
CTGAGAGAAAAGGAAGAGGAAAGCCAGAAGAAAACCAAGGAAGTCTCCAAACTCCAGACGGAGGTTCAGA
CCACCAAGCAGGCGCTGAAGAACTTAGAGACCAGAGAGGTCGTCGACATGTCGAAGTACAAAGCCACCAA
GAACGACTTGGAGACCCAGATTTCCAACTTAAATGACAAACTGGCCAGCCTGAACAGGAAGTACGACCAA
GCGTGTGAGGAGAAGGTCTCTGCCAAGGACGAGAAGGAGCTGCTCCACCTGAGCATCGAGCAGGAGATCA
GGGACCAGAAGGAGCGCTGTGACAAGTCCCTGACGACCATCATGGAACTGCAGCAGAGGATCCAGGAGTC
CGCCAAGCAGATCGAAGCCAAGGACAATAAGATAACTGAACTTCTGAATGATGTCGAAAGACTAAAGCAG
GCGCTCAACGGCCTTTCTCAGCTCACCTACAGCAGTGGCAGCCCCACCAAGCGGCAGAGCCAGCTGGTGG
ATACTCTGCAGCAGCGAGTGAGGGATCTGCAGCAGCAGCTGGCTGATGCTGACAGACAGCACCAAGAAGT
TATCGCTATCTACCGGACACACCTCCTCAGTGCCGCACAGGGCCACATGGATGAAGATGTGCAGGCAGCC
CTACTGCAGATCATACAGATGCGACAAGGCCTTGTGTGCTAG

Translation (1413 aa):
MKSLKSRLWKQDAPGPTSPSSPTAVASTQSAEWNKYDDRLMKAAERGDVEKVSSILAKKGVHPGKLDVEG
RSAFHVVASKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTAL
HDAAMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGC
EYGCRDAVEVLVKNGADLTLLDALGHDSSYYARIGDNLDILNLLKTASENTNKGGGRELWRKGPPLQQRN
LSHTQDEGSVKSTQREQREPHSFQDLEIENEDLREKLRKIQQEQRILLDKVNGLQLQLNEEVMVADDLES
EREKLKSLLAAKEKQHEESLRTIEALKNRFKYFESDHPGPGSYPSNRKEDMLHKQGQMYTTEPQCASPGI
PPHMHSRSMLRPLELSLPSQTSYSENEILKKELETLRTYYDSAKQDRLKFQNELAHKVAECKALALECER
VKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTNEAATGSHRIIEELREQLKDLKGKY
EGASAEVGKLRSQIKQSEMLVGEFKRDEGRLVEENKRLQKECGTCEVELERRGRRVVELEGQLKELGAKL
ALSVPTEKFESMKSSLSNDINEKVKRLAEVGRDYESAQGEIRQLKRDLESVRAQHIRPEEHEQLRSRLEQ
KSGELGKKVSELTLKNQTLQKDVEKLHADNKLLNQQVHSLTVEMKTRYVPLRVSEEMKKSHDVNVEDLNK
KLSEATQRYTEKKQEAERLLAENDKLTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKKQLSELNKKCGE
GQEKIRALMSENSSLKKTLSSQYVPAKTHEEVKASLNSTVEKTNRALLEAKKRFDDTSQEVSKLRDENEV
LRRNLENVQNQMKADYVSLEEHSRRMSTVSQSLKEAQEANAAILADHRQGQEEIVSLHAEIKAQKKELDT
IQECIKLKYAPLARLEECERKFKATEKGLKEQLSEQTHKCRQRDEEVKKGKQENERLRADLAALQKELQD
RNALAEEAREAERALSGKADELSKQLKDLSQKYSDVKSEREKLVEEKAKQASEILAAQNLLQKQPVPLEQ
VEALKKSLNGTIEQLKEELRSKQRCLEREQQTVSQLQQLLENQKNSSVTLAEHLKLKEALEKEVGIMKAS
LREKEEESQKKTKEVSKLQTEVQTTKQALKNLETREVVDMSKYKATKNDLETQISNLNDKLASLNRKYDQ
ACEEKVSAKDEKELLHLSIEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDNKITELLNDVERLKQ
ALNGLSQLTYSSGSPTKRQSQLVDTLQQRVRDLQQQLADADRQHQEVIAIYRTHLLSAAQGHMDEDVQAA
LLQIIQMRQGLVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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