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Report for CCDS52891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52891.1 Public Mus musculus 9 Gk5 23 108 98 CCDS HistoryNCBI Gene:235533Re-query CCDS DB by CCDS ID:52891.1Re-query CCDS DB by GeneID:235533See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122383.2 ENSMUSP00000112717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122383.2Link to Ensembl Protein Viewer:ENSMUSP00000112717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122383Re-query CCDS DB by Protein ID:ENSMUSP00000112717
Original member Current member NCBI NM_177352.5 NP_796326.1 Accepted alive Link to Nucleotide Sequence:NM_177352.5Link to Protein Sequence:NP_796326.1Re-query CCDS DB by Nucleotide ID:NM_177352Re-query CCDS DB by Protein ID:NP_796326Link to BLAST:NP_796326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796326.1 516 Q8BX05-2 516 100% 0 0

Chromosomal Locations for CCDS 52891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96119451 96119612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96129001 96129094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96133389 96133464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96137745 96137838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96140539 96140670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96145672 96145747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96150216 96150277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96150435 96150508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96150736 96150796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96153081 96153207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96155393 96155497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96171460 96171554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96174690 96174793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96176230 96176289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96177419 96177552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96178921 96179006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96181772 96181780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGTCAGGGCAGCAGGAGCGTGCAGAGCGGCAGCGAGAGGAACTGAGCGCGTCGGCCTCGCCGCCCTCCC
GCTTCGTGCTGGGGCTGGACGTGGGCAGCACGGTGATCCGCTGCCACGTCTATGACCAGACGGCGCGAGT
GCGAGGCTCCAGCGCGCAGAAGGTAGAAAATGTTTACCCTCAACCTGGCTGGGTTGAAATCGATCCTGAT
TCTCTCTGGGCTCAGTTTGTTGCCGTAATAAAAGATGCTGTCAAAGCTGCAGGGGTGCAGATGAATCAAA
TTGTCGGTCTTGGCATATCAACACAGAGAGCCACTTTCATTACATGGAACAAGAAAACAGGCCATCATTT
TCACAACTTCATTAGCTGGCAAGACCTAAGGGCAGCTGAACTTGTAAAGTCCTGGAATAATTCTCTCATA
ATGAAGCTATTGCATGGGGCCACCCGAGTCCTTCATTTCTTCAGTAGAAGTAAAGTAATGCTAACGGTCA
GCCGCTTCAATTTCAGCACCCAGCATGCCACCTTAAGATTGACCTGGATTTTACAAAACCTATCTGAGGT
GAAAAGGGCAGTTGAAGAAGACAATTGTTGCTTTGGGACGATTGATACCTGGCTGTTATACAAGCTCACG
AAAGGTTCTTCCTACGCCACGGATTATTCAAATGCCAGCACCACTGGATTTTTTGATCCCTATGCGATGC
GCTGGAGCAGGCTCATAACCACCATGGTCTCCATCCCACTGTCTATCCTGCCTCCTGTGAAGGATACCAG
CTATAATTTTGGATCAGTGGATGAGAAGATATTTGGCGTGCCTATACCAGTTGTTGCCTTGGTTGGTGAC
CAGCAGTCGGCCATGTTTGGAGAGTGCTGCTTCGAGACGGGAGATGTGAAGCTAACCATGGGAACTGGAA
CATTTTTGGATATCAATACTGGAAAAAACCTTCAGCATGTTAATGGAGGCTTTTATCCACTAATTGGATG
GAAGATTGGGCAAGAACTTGTATGTTTAGCTGAAGGCAATGCAGGAGACACGGGCACCGCCATAATGTGG
GCTCAAAAATTAGATCTCTTCACAGACGCTGCTGAGACTGAAAAAATGGCCCTGAGCCTGGAAGATTCTG
AAGGGGTTTACTTTGTTCCGTCGTTTAGTGGATTACAGGCTCCATTAAATGACCCCTGTGCCTGTGCCTC
TTTTATGGGTTTGAAGCACTCCACTAATAAATACCATCTTGTCCGAGCAATATTGGAGTCAATAGCTTTC
AGGAACAAACAGTTGTACGACATGCTGCAGAGAGAAATCCAGATTCCCGTCACGAACATCCGGGCAGATG
GAGGCGTGTGTAACAACGCTTTCGTCATGCAGATGACTTCAGACCTGATAAATGAGAAGATAGACAGACC
TGCCCACTTCGACATGTCCTGCTTGGGGGCAGCCTCTCTGGCTGGCCTCGCTGTTGGATTTTGGGCGGAC
AAGGAAGAGCTCCAGAAGCTGAGGCAAAGCGAGATGGTTTTCAAGCCTCAGAAGAAGTGGCAGGAATACG
AGGCATTTTAA

Translation (516 aa):
MSGQQERAERQREELSASASPPSRFVLGLDVGSTVIRCHVYDQTARVRGSSAQKVENVYPQPGWVEIDPD
SLWAQFVAVIKDAVKAAGVQMNQIVGLGISTQRATFITWNKKTGHHFHNFISWQDLRAAELVKSWNNSLI
MKLLHGATRVLHFFSRSKVMLTVSRFNFSTQHATLRLTWILQNLSEVKRAVEEDNCCFGTIDTWLLYKLT
KGSSYATDYSNASTTGFFDPYAMRWSRLITTMVSIPLSILPPVKDTSYNFGSVDEKIFGVPIPVVALVGD
QQSAMFGECCFETGDVKLTMGTGTFLDINTGKNLQHVNGGFYPLIGWKIGQELVCLAEGNAGDTGTAIMW
AQKLDLFTDAAETEKMALSLEDSEGVYFVPSFSGLQAPLNDPCACASFMGLKHSTNKYHLVRAILESIAF
RNKQLYDMLQREIQIPVTNIRADGGVCNNAFVMQMTSDLINEKIDRPAHFDMSCLGAASLAGLAVGFWAD
KEELQKLRQSEMVFKPQKKWQEYEAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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