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Report for CCDS59749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59749.1 Public Mus musculus 9 Rbm6 23 108 98 CCDS HistoryNCBI Gene:19654Re-query CCDS DB by CCDS ID:59749.1Re-query CCDS DB by GeneID:19654See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183032.7 ENSMUSP00000138400.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183032.7Link to Ensembl Protein Viewer:ENSMUSP00000138400.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183032Re-query CCDS DB by Protein ID:ENSMUSP00000138400
Original member Current member NCBI NM_011251.3 NP_035381.2 Accepted alive Link to Nucleotide Sequence:NM_011251.3Link to Protein Sequence:NP_035381.2Re-query CCDS DB by Nucleotide ID:NM_011251Re-query CCDS DB by Protein ID:NP_035381Link to BLAST:NP_035381.2

Chromosomal Locations for CCDS 59749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107773682 107773807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107774592 107774721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107777930 107778027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107779574 107779648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107782610 107782864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107783690 107783785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107787252 107787398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107787779 107787864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107788108 107788189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107788330 107788372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107789608 107789705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107791005 107791165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107791752 107792018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107796477 107796537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107800699 107800773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107833434 107833507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107847268 107847337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107850915 107851004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107852125 107853403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107860349 107860392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3357 nt):
ATGTGGGGGGATTCTCGATCTGCTAACAGAACAGGACCTTTTCGTGGGAGCCAAGAAGAAAGGTTTGCTC
CCGGGTGGAACAGGGATTATCCTCCTCCTCCCCTTAAGAGTCATGCTCAAGAGAGACACTCTGGCAACTT
TCCTGGCAGAGATTCACTTCCCTTTGATTTCCAGGGGCATTCAGGACCTCCCTTTGCAAATGTAGAGGAG
CATTCTTTCAGCTATGGAGGTAGAGATGGACCACATGGTGACTATCAAGGAGGGGAGGGACCTGGACACG
ATTTCAGAGGGGGAGATTTTTCATCTTCGGATTTCCAGAGTAGAGATTCAGCACAGTTGGACTTCAGGAA
CAGGGACATACATTCTGGGGATTTTCGGGATAGAGAAGGACCACCTATGGACTACAGGGGTGGAGATGGT
ACTCCTATGGATTATAGAGGTAGGGAGACACCTCATATGAATTATAGAGACAGGGATTCTCATACTGTTG
ACTTTAGAAGTAGAGATGTCCCTCCAACTGACTTTAGGGGGCGGGGCACATATGATTTAGATTTTAGAGG
CCGAGAGGGATCCCATTCAGATTTTAGGGGAAGAGATTTATCAGATTTGGATTTTAGATCCAGAGATCAG
TCTCGTTCTGATTTTAGGAACAGAGATGTATCTGATTTGGACTTCAGGGATAAAGATGGAACACAGGTGG
ACTTTAGAGGCCGAGGTTCAGCTACTACTGATCTAGACTTTAGGAACAGGGATACACCACATTCGGATTT
CAGAGGTAGACATCGTACTAGGACTTACCAAGATTTTCGGGGCAGAGAGGTAGGACCTTGTATGGAATTT
AAAGATAGGGAGATGCCTCCTATGGATCCAAAAGTTTTGGATTACATTCAGCCTTCTCCACAAGAGAGAG
AACATTCTGGTATGAATATGAACAAGAGAGAAGAATCCATACATGACCATGCAATGGAAAGACCTGCTTT
TGGTGTTCAGAAGGGAGAATTTGAGCATTCAGAAACAAGAGAAGGAGAAACACAAAGTGGAACTTTTGAA
CATGAATCTCAATCAGACTTTCAAAACAGCCAAAGTCCAGTTCAAGAACAAGATAAGCCAAAGCTTTCTG
GAGGTGAACAACAGAGTTCAGATGCTGGTCTGTTTAAAGAAGAAGGTGATTTGGACTTTCTTGGCCAACA
AGACACTGATTACAGAAGCATTGAATACTGTGATGTGGATCACAGGTTGCCAGGAAACCAGATTTTTGGC
TATGGCCAGAGCAAGTCATTTTCTCAGGGCAAAATGTCCAGAGATGCCCAACAAGACCTTCAGGATCAAG
ATTATAGGACTGGCCCAAGCGAGGAGAAACCTAACAGGCTTATTCGATTAAGTGGGGTTCCAGAAAATGC
CACAAAAGAAGAGATTCTTAATGCCTTTCGAACTTCTGATGGCATACCTGTAAAGGACTTGCAGTTGAAG
GAGTATAACACAGGTTACGACTATGGCTATGTCTGCGTGGAATTTTCACTCTTGGAAGATGCCATCGGAT
GCATGGAGGCCAACCAGGGAACTCTAATGATCCATGACAAAGAGGTCACTCTTGAGTATGTACCAAGCCC
AGATTTTTGGTACTGTAAACGATGTAAGGCTAGCACTGGTGGGCATCAGTCTTCTTGTTCATTCTGCAAG
GGCCCAAAGGAAGAAGTCAAGCAGGAACTAGTGTCCTATCCTCAACCTCAGAAAACATCCATACCAGTAC
CTTCAGAAAAACAGCCCAACCAGCCACGACCTGCTGATAAGGAGCATGAACTCAGGAAACGGGAGGAAGG
CCAAGAGTCAAGATTAGGACATCAGAAGAGAGATACAGAAAGATACTTCCCTCACTCTCGAAGGGAAGGG
CTTACTTTCCGAAGAGACCGGGAAAAGGAGCCATGGTCTGGAGATTCACGCCAGGATGGGGAGAGTAAAA
CAATCATGCTAAAGCGTATCTATCGTTCCACTCCACCCGAAGTGATAGTCGAAGTGCTGGAGCCCTACGT
GCATCTCACTACTGCCAATGTCCGCATCATCAAGAACAGGACTGGCCCCATGGGTCACACTTACGGTTTT
ATAGACCTTGACTCCCATGCAGAAGCTCTTCGAGTAGTGAAGATTTTGCAGAACCTTGATCCACCATTTA
GCATTGATGGGAAGATGGTAGCTGTAAACCTGGCCACTGGAAAACGAAGAAATGATTCTGGGGACCATTC
TGACCACATGCATTACTATCAGGGTAAAAAATATTTTCGAGATAGGAGAGGAGGAAACAGAAATTCAGAC
TGGTCTTCAGATACAAATCGACAAGGGCAACAGTCATCATCTGACTGCTACATATATGATTCTACTACTG
GCTACTATTATGACCCCTTGGCAGGAACTTACTATGATCCCAACACCCAGCAAGAAGTCTATGTGCCCCA
GGACCCTGAGTCACCTGATGAAGAAGAAATCAAGGAAAAGAAATCTACCAGTCAAGGAAAGTCAAATAGC
AAGAAAGAAACATCTAAAAGAGATGGCAAGGAGAAAAAAGACAGAGGAATGACAAAGTTTCAAGAAAGTA
CCAGTGAGGGGAAGCCTCCCCTAGAAGATGTTTTTAAGAAGCCTCTACCTCCTACTGTGAAAAAGGAAGA
GAGTCCTCCTCCACCTAAGGTGGTAAATCCACTGATTGGTCTCCTGGGTGAATATGGAGGAGACAGTGAC
TATGAGGAAGAGGAAGAAGAGGAACAGGCTCCTCCTGTGCAGCCTCGCACAGCACAGCCTCGCGAGGAAA
TGACCAAGAAAGAGAATGAAGACGACAAACTCACTGACTGGAATAAACTGGCTTGTCTGCTCTGCAGAAG
GCAGTTTCCCAATAAAGAAGTTCTTACGAAACACCAACAACTGTCCGACCTGCACAAGCAAAACCTGGAA
ATTCACCGGAAGATAAAACAGTCAGAGCAAGAGCTCGCCTATCTGGAGAGGAGAGAGCGGGAGGGAAGGT
TTAAAGAAAAAGGAAATGACCGAAGGGAAAAACTACAATCTTTTGATTCTCCAGAAAGGAAACGGATTAA
ATACTCCAGAGAAACAGACAGTGATCGTAACCCTGTTGATAAAGAAGACACTGACACTAGTAGCAAAGGA
GGCTGTGCCCAGCAGGCCACTGGCTGGAGGAAAGGGGCGGGCCTGGGATATAGCCATCCTGGATTGGGTT
CATCAGAGGAGATTGAAGGGCGGATGAGGGGACCTGGGGGTGGTCCCCCAGGAAGAACCAGCAAGAGACA
GTCTAATGAGACTTACCGAGACGCTGTTCGAAGAGTCATGTTTGCTCGATATAAAGAACTCGATTAA

Translation (1118 aa):
MWGDSRSANRTGPFRGSQEERFAPGWNRDYPPPPLKSHAQERHSGNFPGRDSLPFDFQGHSGPPFANVEE
HSFSYGGRDGPHGDYQGGEGPGHDFRGGDFSSSDFQSRDSAQLDFRNRDIHSGDFRDREGPPMDYRGGDG
TPMDYRGRETPHMNYRDRDSHTVDFRSRDVPPTDFRGRGTYDLDFRGREGSHSDFRGRDLSDLDFRSRDQ
SRSDFRNRDVSDLDFRDKDGTQVDFRGRGSATTDLDFRNRDTPHSDFRGRHRTRTYQDFRGREVGPCMEF
KDREMPPMDPKVLDYIQPSPQEREHSGMNMNKREESIHDHAMERPAFGVQKGEFEHSETREGETQSGTFE
HESQSDFQNSQSPVQEQDKPKLSGGEQQSSDAGLFKEEGDLDFLGQQDTDYRSIEYCDVDHRLPGNQIFG
YGQSKSFSQGKMSRDAQQDLQDQDYRTGPSEEKPNRLIRLSGVPENATKEEILNAFRTSDGIPVKDLQLK
EYNTGYDYGYVCVEFSLLEDAIGCMEANQGTLMIHDKEVTLEYVPSPDFWYCKRCKASTGGHQSSCSFCK
GPKEEVKQELVSYPQPQKTSIPVPSEKQPNQPRPADKEHELRKREEGQESRLGHQKRDTERYFPHSRREG
LTFRRDREKEPWSGDSRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGF
IDLDSHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFRDRRGGNRNSD
WSSDTNRQGQQSSSDCYIYDSTTGYYYDPLAGTYYDPNTQQEVYVPQDPESPDEEEIKEKKSTSQGKSNS
KKETSKRDGKEKKDRGMTKFQESTSEGKPPLEDVFKKPLPPTVKKEESPPPPKVVNPLIGLLGEYGGDSD
YEEEEEEEQAPPVQPRTAQPREEMTKKENEDDKLTDWNKLACLLCRRQFPNKEVLTKHQQLSDLHKQNLE
IHRKIKQSEQELAYLERREREGRFKEKGNDRREKLQSFDSPERKRIKYSRETDSDRNPVDKEDTDTSSKG
GCAQQATGWRKGAGLGYSHPGLGSSEEIEGRMRGPGGGPPGRTSKRQSNETYRDAVRRVMFARYKELD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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