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Report for CCDS41076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41076.1 Public Mus musculus X Snx12 23 108 98 CCDS HistoryNCBI Gene:55988Re-query CCDS DB by CCDS ID:41076.1Re-query CCDS DB by GeneID:55988See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077876.3 ENSMUSP00000077038.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077876.3Link to Ensembl Protein Viewer:ENSMUSP00000077038.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077876Re-query CCDS DB by Protein ID:ENSMUSP00000077038
Original member NCBI NM_018875.2 NP_061363.2 Updated not alive Link to Nucleotide Sequence:NM_018875.2Link to Protein Sequence:NP_061363.2Re-query CCDS DB by Nucleotide ID:NM_018875Re-query CCDS DB by Protein ID:NP_061363
Current member NCBI NM_018875.3 NP_061363.2 Accepted alive Link to Nucleotide Sequence:NM_018875.3Link to Protein Sequence:NP_061363.2Re-query CCDS DB by Nucleotide ID:NM_018875Re-query CCDS DB by Protein ID:NP_061363Link to BLAST:NP_061363.2

Chromosomal Locations for CCDS 41076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101212323 101212346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101213774 101213864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101214401 101214525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101215483 101215578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101222262 101222426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGTCGGACACCGCAGTGGCTGACACTAGGCGCCTTAACTCGAAGCCCCAAGACCTGACCGACGCTTACG
GGCCGCCCAGTAACTTCCTGGAGATAGACATCTTTAATCCACAGACGGTGGGCGTGGGCCGCGCGCGCTT
CACCACCTATGAGGTTCGCATGCGGACAAACCTACCCATCTTCAAGCTGAAAGAATCCTGTGTACGGCGA
CGCTATAGTGACTTTGAGTGGCTGAAAAATGAGCTGGAGCGAGATAGTAAGATCGTAGTACCACCACTGC
CTGGGAAAGCCTTGAAGCGGCAGCTCCCTTTCCGAGGAGATGAAGGGATCTTTGAGGAGTCTTTCATTGA
AGAAAGGAGGCAAGGCCTCGAACAGTTTATTAACAAAATTGCTGGGCACCCACTGGCTCAGAATGAACGC
TGTCTACACATGTTCCTGCAGGAGGAGGCAATTGATAGGAACTACGTCCCTGGGAAGGTCCTTGGGGAAA
AGGATTGCTGA

Translation (166 aa):
MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRR
RYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNER
CLHMFLQEEAIDRNYVPGKVLGEKDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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