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Report for CCDS41241.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41241.2 Public Homo sapiens 1 PLEKHG5 24 110 108 CCDS HistoryNCBI Gene:57449Re-query CCDS DB by CCDS ID:41241.2Re-query CCDS DB by GeneID:57449See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 41241.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377732.5 ENSP00000366961.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377732.5Link to Ensembl Protein Viewer:ENSP00000366961.1Re-query CCDS DB by Nucleotide ID:ENST00000377732Re-query CCDS DB by Protein ID:ENSP00000366961
Original member Current member EBI ENST00000400915.8 ENSP00000383706.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400915.8Link to Ensembl Protein Viewer:ENSP00000383706.4Re-query CCDS DB by Nucleotide ID:ENST00000400915Re-query CCDS DB by Protein ID:ENSP00000383706
Original member Current member EBI ENST00000537245.6 ENSP00000439625.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537245.6Link to Ensembl Protein Viewer:ENSP00000439625.2Re-query CCDS DB by Nucleotide ID:ENST00000537245Re-query CCDS DB by Protein ID:ENSP00000439625
Original member Current member NCBI NM_001042663.3 NP_001036128.2 Accepted alive Link to Nucleotide Sequence:NM_001042663.3Link to Protein Sequence:NP_001036128.2Re-query CCDS DB by Nucleotide ID:NM_001042663Re-query CCDS DB by Protein ID:NP_001036128Link to BLAST:NP_001036128.2
Original member Current member NCBI NM_001265592.2 NP_001252521.2 Accepted alive Link to Nucleotide Sequence:NM_001265592.2Link to Protein Sequence:NP_001252521.2Re-query CCDS DB by Nucleotide ID:NM_001265592Re-query CCDS DB by Protein ID:NP_001252521Link to BLAST:NP_001252521.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036128.2 1043 O94827-3 1043 100% 0 0
NP_001252521.2 1043 O94827-3 1043 100% 0 0

Chromosomal Locations for CCDS 41241.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6467563 6467572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6467825 6468586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6469042 6469241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6469335 6469450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6469544 6469676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6470236 6470355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6470506 6470643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6470735 6470884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6470990 6471100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6471488 6471637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6471758 6471808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6472527 6472622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6472986 6473174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6473251 6473454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6474013 6474164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6474451 6474587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6475047 6475138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6475462 6475522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6475931 6476036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6477529 6477658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6496493 6496516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3132 nt):
ATGGACAAGGGGCGGGCGGCCAAGGTATGTCACCACGCCGACTGCCAGCAGCTGCACCGCCGGGGGCCCC
TCAACCTCTGCGAGGCCTGTGACAGCAAGTTCCACAGCACCATGCATTATGATGGGCATGTCCGCTTCGA
CCTTCCCCCACAAGGCTCTGTGCTGGCCCGGAACGTGTCCACCCGGTCATGCCCGCCGCGCACCAGCCCC
GCAGTGGACTTGGAGGAGGAGGAGGAGGAGAGCTCTGTGGATGGCAAAGGGGACCGGAAGAGCACAGGCC
TGAAACTCTCCAAGAAGAAAGCAAGGAGGAGACACACGGATGACCCAAGCAAGGAATGCTTCACTCTGAA
ATTTGACCTGAATGTGGACATTGAGACAGAGATCGTCCCAGCCATGAAGAAGAAGTCACTGGGGGAGGTG
CTGCTGCCTGTATTTGAAAGGAAGGGCATTGCGCTGGGCAAAGTGGACATCTACCTGGACCAGTCCAACA
CACCCCTGTCCCTCACCTTCGAGGCCTACAGGTTCGGGGGACACTACCTTCGTGTCAAAGCCCCAGCCAA
GCCTGGAGATGAGGGCAAGGTGGAGCAGGGCATGAAGGACTCCAAGTCCCTGAGTTTGCCGATTCTGCGG
CCAGCTGGGACCGGGCCCCCCGCCCTGGAGCGTGTGGACGCCCAGAGCCGCCGGGAGAGCCTGGACATCT
TGGCCCCTGGCCGCCGCCGCAAGAACATGTCGGAGTTCCTGGGGGAGGCGAGCATCCCCGGGCAGGAGCC
CCCCACGCCCTCCAGCTGCTCTCTGCCCAGCGGCAGCAGTGGCAGCACCAACACTGGCGACAGCTGGAAG
AACCGGGCGGCCAGTCGCTTCAGCGGCTTTTTCAGCTCCGGCCCCAGCACCAGCGCCTTTGGCCGGGAGG
TAGACAAGATGGAGCAGCTGGAGGGCAAGCTGCACACCTACAGCCTCTTCGGGCTGCCCAGGCTGCCCCG
GGGGCTGCGCTTCGACCATGACTCCTGGGAGGAGGAGTACGATGAAGACGAGGATGAGGACAATGCCTGC
CTGAGGCTGGAGGACAGCTGGCGGGAGCTCATTGATGGGCATGAGAAGCTGACCCGGCGGCAGTGCCACC
AGCAGGAGGCGGTGTGGGAGCTGCTGCACACGGAGGCCTCCTACATCAGGAAACTGCGGGTGATCATCAA
CCTGTTCCTGTGCTGCCTCCTGAACCTGCAAGAGTCAGGGCTGCTGTGTGAGGTGGAGGCGGAGCGCCTG
TTCAGCAACATCCCGGAGATCGCGCAGCTGCACCGCAGGCTGTGGGCTAGCGTGATGGCGCCGGTGCTGG
AGAAGGCGCGGCGCACGCGAGCGCTGCTACAGCCCGGGGACTTCCTCAAAGGCTTCAAGATGTTCGGCTC
GCTCTTCAAGCCCTACATCCGCTACTGCATGGAGGAGGAGGGCTGCATGGAGTACATGCGCGGCCTGCTG
CGCGACAACGACCTCTTCCGGGCCTACATCACGTGGGCGGAGAAGCACCCACAGTGCCAGAGGCTGAAGC
TGAGCGACATGCTGGCCAAACCCCACCAGCGGCTCACCAAGTACCCGCTGCTGCTCAAGTCGGTGCTGAG
GAAGACCGAGGAGCCGCGCGCCAAGGAGGCCGTCGTCGCCATGATCGGCTCCGTGGAGCGCTTCATCCAC
CACGTGAACGCGTGCATGCGGCAGCGGCAGGAGCGGCAGCGGCTGGCGGCCGTGGTGAGCCGCATCGACG
CCTACGAGGTGGTGGAAAGCAGCAGCGACGAAGTGGACAAGCTCCTGAAGGAATTTCTGCACCTGGACTT
GACAGCGCCCATCCCTGGCGCCTCCCCGGAGGAGACGCGGCAGCTGCTGCTGGAGGGGAGCCTGAGGATG
AAGGAGGGGAAGGACAGCAAGATGGATGTGTACTGCTTCCTCTTCACGGATCTGCTGTTGGTGACCAAAG
CAGTGAAGAAGGCAGAGAGGACCAGGGTCATCAGGCCACCCCTGCTCGTGGACAAGATTGTGTGCCGGGA
GCTACGGGACCCTGGGTCCTTCCTCCTTATCTACCTGAATGAGTTTCACAGTGCTGTAGGGGCCTACACG
TTCCAGGCCAGTGGCCAGGCCTTGTGCCGTGGCTGGGTGGACACCATTTACAATGCCCAGAACCAGCTGC
AACAGCTGCGTGCACAGGAGCCCCCAGGCAGTCAGCAGCCCCTGCAGAGCCTGGAAGAGGAGGAGGATGA
GCAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGGCGAGGACAGTGGCACTTCAGCTGCCAGC
TCCCCTACCATCATGCGGAAAAGCAGCGGCAGCCCCGACTCTCAGCACTGTGCCTCAGATGGCTCCACGG
AGACCCTGGCCATGGTTGTGGTAGAGCCTGGGGACACGCTGTCCTCCCCCGAGTTCGACAGCGGTCCTTT
CAGCTCCCAGTCTGATGAGACCTCTCTCAGCACCACTGCCTCATCTGCCACGCCCACCAGTGAGCTGCTG
CCCCTGGGTCCGGTGGACGGCCGCTCCTGCTCCATGGACTCTGCCTACGGCACCCTCTCCCCAACCTCCT
TACAAGACTTTGTGGCCCCAGGCCCAATGGCAGAGCTAGTGCCTCGGGCCCCAGAGTCCCCACGAGTTCC
TTCCCCTCCACCCTCGCCCCGTCTCCGCCGCCGCACCCCTGTCCAGCTGTTGAGCTGCCCGCCCCACCTG
CTCAAGTCTAAGTCCGAGGCCAGCCTCCTCCAGCTGCTGGCAGGGGCTGGCACCCATGGGACACCCTCTG
CCCCCAGCCGCAGCCTGTCAGAGCTCTGCCTGGCTGTTCCAGCCCCAGGTATTAGGACTCAGGGCTCCCC
TCAGGAAGCTGGGCCCAGCTGGGATTGCCGAGGGGCCCCTAGCCCTGGCAGCGGTCCTGGGCTAGTCGGC
TGCCTGGCCGGGGAACCTGCAGGCTCCCACAGGAAGAGGTGTGGAGACCTGCCCTCGGGGGCCTCTCCCA
GGGTCCAGCCTGAGCCCCCACCAGGGGTCTCTGCCCAGCACAGGAAGCTGACCCTGGCCCAGCTCTACCG
AATCAGGACCACCCTGCTGCTTAACTCCACGCTCACTGCCTCGGAGGTCTGA

Translation (1043 aa):
MDKGRAAKVCHHADCQQLHRRGPLNLCEACDSKFHSTMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSP
AVDLEEEEEESSVDGKGDRKSTGLKLSKKKARRRHTDDPSKECFTLKFDLNVDIETEIVPAMKKKSLGEV
LLPVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGMKDSKSLSLPILR
PAGTGPPALERVDAQSRRESLDILAPGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGSTNTGDSWK
NRAASRFSGFFSSGPSTSAFGREVDKMEQLEGKLHTYSLFGLPRLPRGLRFDHDSWEEEYDEDEDEDNAC
LRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIRKLRVIINLFLCCLLNLQESGLLCEVEAERL
FSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLL
RDNDLFRAYITWAEKHPQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIH
HVNACMRQRQERQRLAAVVSRIDAYEVVESSSDEVDKLLKEFLHLDLTAPIPGASPEETRQLLLEGSLRM
KEGKDSKMDVYCFLFTDLLLVTKAVKKAERTRVIRPPLLVDKIVCRELRDPGSFLLIYLNEFHSAVGAYT
FQASGQALCRGWVDTIYNAQNQLQQLRAQEPPGSQQPLQSLEEEEDEQEEEEEEEEEEEEGEDSGTSAAS
SPTIMRKSSGSPDSQHCASDGSTETLAMVVVEPGDTLSSPEFDSGPFSSQSDETSLSTTASSATPTSELL
PLGPVDGRSCSMDSAYGTLSPTSLQDFVAPGPMAELVPRAPESPRVPSPPPSPRLRRRTPVQLLSCPPHL
LKSKSEASLLQLLAGAGTHGTPSAPSRSLSELCLAVPAPGIRTQGSPQEAGPSWDCRGAPSPGSGPGLVG
CLAGEPAGSHRKRCGDLPSGASPRVQPEPPPGVSAQHRKLTLAQLYRIRTTLLLNSTLTASEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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