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Report for CCDS55589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55589.1 Public Homo sapiens 1 NHSL3 24 110 108 CCDS HistoryNCBI Gene:57648Re-query CCDS DB by CCDS ID:55589.1Re-query CCDS DB by GeneID:57648See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55589.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294521.7 ENSP00000294521.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000294521.7Link to Ensembl Protein Viewer:ENSP00000294521.3Re-query CCDS DB by Nucleotide ID:ENST00000294521Re-query CCDS DB by Protein ID:ENSP00000294521
Original member Current member NCBI NM_001198973.2 NP_001185902.1 Accepted alive Link to Nucleotide Sequence:NM_001198973.2Link to Protein Sequence:NP_001185902.1Re-query CCDS DB by Nucleotide ID:NM_001198973Re-query CCDS DB by Protein ID:NP_001185902Link to BLAST:NP_001185902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185902.1 143 Q9P206-4 143 100% 0 0

Chromosomal Locations for CCDS 55589.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32765770 32765827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32767787 32767957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32768062 32768117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32768652 32768775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32772865 32772887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGTGGTGTTCGTTGGCCGCCGCCTCCCGGCGCTCCTAGGGCTGTTTAAGAAGAAGGGCTCTGCCAAGG
CTGAGAATGACAAACATCTAAGTGTAGGGCCTGGCCAGGGGCCAGGGTCTGCAGTGGATGAGCACCAGGA
CAACGTCTTCTTTCCCAGTGGGCGACCCCCCCACCTGGAAGAGCTGCACACTCAGGCCCAGGAGGGGCTC
CGCTCCCTACAACACCAAGAGAAACAGAAACTGAACAAGGGTGGCTGGGACCATGGAGACACCCAGAGTA
TCCAGTCCTCCCGGACGGGGCCGGATGAAGACAACATCTCCTTCTGCAGTCAGACCACATCCTACGTGGC
TGAGAGCTCCACAGCAGAGGACGCGCTCTCCATCCGCTCGGAGATGATCCAGCGCAAAGACTCACAGAAA
GAGCTGGCCTGA

Translation (143 aa):
MVVFVGRRLPALLGLFKKKGSAKAENDKHLSVGPGQGPGSAVDEHQDNVFFPSGRPPHLEELHTQAQEGL
RSLQHQEKQKLNKGGWDHGDTQSIQSSRTGPDEDNISFCSQTTSYVAESSTAEDALSIRSEMIQRKDSQK
ELA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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