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Report for CCDS30812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30812.1 Public Homo sapiens 1 CSDE1 24 110 108 CCDS HistoryNCBI Gene:7812Re-query CCDS DB by CCDS ID:30812.1Re-query CCDS DB by GeneID:7812See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30812.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358528.9 ENSP00000351329.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358528.9Link to Ensembl Protein Viewer:ENSP00000351329.4Re-query CCDS DB by Nucleotide ID:ENST00000358528Re-query CCDS DB by Protein ID:ENSP00000351329
Original member Current member EBI ENST00000438362.7 ENSP00000407724.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438362.7Link to Ensembl Protein Viewer:ENSP00000407724.3Re-query CCDS DB by Nucleotide ID:ENST00000438362Re-query CCDS DB by Protein ID:ENSP00000407724
Original member Current member EBI ENST00000534699.5 ENSP00000432958.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534699.5Link to Ensembl Protein Viewer:ENSP00000432958.1Re-query CCDS DB by Nucleotide ID:ENST00000534699Re-query CCDS DB by Protein ID:ENSP00000432958
Original member Current member EBI ENST00000689217.1 ENSP00000508874.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689217.1Link to Ensembl Protein Viewer:ENSP00000508874.1Re-query CCDS DB by Nucleotide ID:ENST00000689217Re-query CCDS DB by Protein ID:ENSP00000508874
Original member Current member EBI ENST00000689989.1 ENSP00000509808.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689989.1Link to Ensembl Protein Viewer:ENSP00000509808.1Re-query CCDS DB by Nucleotide ID:ENST00000689989Re-query CCDS DB by Protein ID:ENSP00000509808
Original member Current member EBI ENST00000692719.1 ENSP00000510208.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692719.1Link to Ensembl Protein Viewer:ENSP00000510208.1Re-query CCDS DB by Nucleotide ID:ENST00000692719Re-query CCDS DB by Protein ID:ENSP00000510208
Original member Current member NCBI NM_001007553.3 NP_001007554.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007553.3Link to Protein Sequence:NP_001007554.1Re-query CCDS DB by Nucleotide ID:NM_001007553Re-query CCDS DB by Protein ID:NP_001007554Link to BLAST:NP_001007554.1
Original member Current member NCBI NM_001242892.2 NP_001229821.1 Accepted alive Link to Nucleotide Sequence:NM_001242892.2Link to Protein Sequence:NP_001229821.1Re-query CCDS DB by Nucleotide ID:NM_001242892Re-query CCDS DB by Protein ID:NP_001229821Link to BLAST:NP_001229821.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007554.1 798 O75534-1 798 100% 0 0
NP_001229821.1 798 O75534-1 798 100% 0 0

Chromosomal Locations for CCDS 30812.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 114718169 114718216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114718613 114718745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114719579 114719742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114720539 114720717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114723883 114724002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114725221 114725333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114726211 114726386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114726983 114727090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114730258 114730422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114730508 114730648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114732604 114732816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114733732 114733857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114733989 114734117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114734442 114734523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114736758 114736855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114737471 114737563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114737963 114738072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114739692 114739890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGAGCTTTGATCCAAACCTTCTCCACAACAATGGACATAATGGGTACCCTAATGGTACTTCAGCAGCAC
TGCGTGAAACTGGGGTTATTGAAAAACTGTTAACCTCTTACGGATTTATTCAGTGTTCAGAACGTCAAGC
TAGACTTTTCTTCCACTGTTCACAGTATAATGGCAACCTGCAAGACTTAAAAGTAGGAGATGATGTTGAA
TTTGAAGTATCATCGGACCGACGGACTGGGAAACCCATTGCTGTTAAACTGGTGAAGATAAAACAAGAAA
TCCTCCCTGAAGAACGAATGAATGGACAAGTTGTGTGCGCTGTTCCTCACAACTTAGAGAGTAAATCTCC
AGCTGCCCCGGGTCAGAGTCCAACAGGGAGTGTATGCTACGAACGTAATGGGGAAGTGTTTTATCTGACT
TACACCCCTGAAGATGTCGAAGGGAACGTTCAGCTGGAAACTGGAGATAAAATAAACTTTGTAATTGATA
ACAATAAACATACTGGTGCTGTAAGTGCTCGCAACATTATGCTGTTGAAAAAGAAACAAGCCCGCTGTCA
GGGAGTAGTTTGTGCCATGAAGGAGGCATTTGGCTTTATTGAAAGAGGTGATGTTGTAAAAGAGATATTC
TTTCACTATAGTGAATTTAAGGGTGACTTAGAAACCTTACAGCCTGGCGATGATGTGGAATTCACAATCA
AGGACAGAAATGGTAAAGAAGTTGCAACAGATGTCAGACTATTGCCTCAAGGAACAGTCATTTTTGAAGA
TATCAGCATTGAACATTTTGAAGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGAAT
GACCCATTGCCAGGACGCATCAAAGTTGACTTTGTGATCCCTAAAGAACTTCCCTTTGGAGACAAAGATA
CGAAATCCAAGGTGACCCTGCTGGAAGGTGACCATGTTAGGTTTAATATTTCAACAGACCGACGTGACAA
ATTAGAGCGAGCAACCAATATAGAAGTTCTGTCAAATACATTTCAGTTCACTAATGAAGCCCGAGAAATG
GGTGTGATTGCTGCCATGAGAGATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGATGTTCGTATGTTCT
TCCACTTCAGTGAAATTCTGGATGGGAACCAGCTCCATATTGCAGATGAAGTAGAGTTTACTGTGGTTCC
TGATATGCTCTCTGCTCAAAGAAATCATGCTATTAGGATTAAAAAACTTCCCAAGGGCACGGTTTCATTT
CATTCCCATTCAGATCACCGTTTTCTGGGCACGGTAGAAAAAGAAGCCACTTTTTCCAATCCTAAAACCA
CTAGCCCAAATAAAGGCAAAGAGAAGGAGGCTGAGGATGGCATTATTGCTTATGATGACTGTGGGGTGAA
ACTGACTATTGCTTTTCAAGCCAAGGATGTGGAAGGATCTACTTCTCCTCAAATAGGAGATAAGGTTGAA
TTTAGTATTAGTGACAAACAGAGGCCTGGACAGCAGGTTGCAACTTGTGTGCGACTTTTAGGTCGTAATT
CTAACTCCAAGAGGCTCTTGGGTTATGTGGCAACTCTGAAGGATAATTTTGGATTTATTGAAACAGCCAA
TCATGATAAGGAAATCTTTTTCCATTACAGTGAGTTCTCTGGTGATGTTGATAGCCTGGAACTGGGGGAC
ATGGTCGAGTATAGCTTGTCCAAAGGCAAAGGCAACAAAGTCAGTGCAGAAAAAGTGAACAAAACACACT
CAGTGAATGGCATTACTGAGGAAGCTGATCCCACCATTTACTCTGGCAAAGTAATTCGCCCCCTGAGGAG
TGTTGATCCAACACAGACTGAGTACCAAGGAATGATTGAGATTGTGGAGGAGGGCGATATGAAAGGTGAG
GTCTATCCATTTGGCATCGTTGGGATGGCCAACAAAGGGGATTGCCTGCAGAAAGGGGAGAGCGTCAAGT
TCCAATTGTGTGTCCTGGGCCAAAATGCACAAACTATGGCTTACAACATCACACCCCTGCGCAGGGCCAC
AGTGGAATGTGTGAAAGATCAGTTTGGCTTCATTAACTATGAAGTAGGAGATAGCAAGAAGCTCTTTTTC
CATGTGAAAGAAGTTCAGGATGGCATTGAGCTACAGGCAGGAGATGAGGTGGAGTTCTCAGTGATTCTTA
ATCAGCGCACTGGCAAGTGCAGCGCCTGTAATGTTTGGCGAGTCTGTGAGGGCCCCAAGGCTGTTGCAGC
TCCTCGACCTGATCGGTTGGTCAATCGCTTGAAGAATATCACTCTGGATGATGCCAGTGCTCCTCGCCTA
ATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGGGGTTTGGTGCAGAAAGAAAGATCCGTCAAG
CTGGTGTCATTGACTAA

Translation (798 aa):
MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVE
FEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLT
YTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQN
DPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREM
GVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVE
FSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGD
MVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGE
VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFF
HVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRL
MVLRQPRGPDNSMGFGAERKIRQAGVID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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