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Report for CCDS91385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91385.1 Public Homo sapiens 10 JAKMIP3 24 110 108 CCDS HistoryNCBI Gene:282973Re-query CCDS DB by CCDS ID:91385.1Re-query CCDS DB by GeneID:282973See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 91385.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000658847.1 ENSP00000499348.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000658847.1Link to Ensembl Protein Viewer:ENSP00000499348.1Re-query CCDS DB by Nucleotide ID:ENST00000658847Re-query CCDS DB by Protein ID:ENSP00000499348
Original member Current member EBI ENST00000661339.1 ENSP00000499650.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000661339.1Link to Ensembl Protein Viewer:ENSP00000499650.1Re-query CCDS DB by Nucleotide ID:ENST00000661339Re-query CCDS DB by Protein ID:ENSP00000499650
Original member Current member NCBI NM_001392061.1 NP_001378990.1 Accepted alive Link to Nucleotide Sequence:NM_001392061.1Link to Protein Sequence:NP_001378990.1Re-query CCDS DB by Nucleotide ID:NM_001392061Re-query CCDS DB by Protein ID:NP_001378990Link to BLAST:NP_001378990.1
Original member Current member NCBI NM_001392062.1 NP_001378991.1 Accepted alive Link to Nucleotide Sequence:NM_001392062.1Link to Protein Sequence:NP_001378991.1Re-query CCDS DB by Nucleotide ID:NM_001392062Re-query CCDS DB by Protein ID:NP_001378991Link to BLAST:NP_001378991.1

Chromosomal Locations for CCDS 91385.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 132117191 132117574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132133312 132133527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132135041 132135160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132135930 132136076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132137019 132137150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132137254 132137289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132138119 132138178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132140451 132140579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132141920 132142048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132145107 132145190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132145518 132145580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132147952 132148050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132149412 132149510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132149982 132150035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132152958 132153023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132153759 132153827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132153913 132153990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132163209 132163412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132164670 132164735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132166983 132167033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGAAGGAGCTACAGGCTGTGCGTGAGACGCTGCTGCGGCAGCATGAGGCTGAGCTGCTCAGGGTCATCA
AGATCAAGGACAACGAGAACCAGCGGCTGCAGGCACTGCTCAGTGCCCTGCGTGATGGCGGCCCCGAAAA
GGTCAAGACCGTGCTGCTGTCCGAGGCCAAGGAGGAGGCCAAGAAGGGGTTCGAGGTGGAGAAGGTCAAG
ATGCAGCAGGAGATCTCCGAGCTCAAGGGCGCCAAAAGGCAGGTGGAGGAGGCGCTGACGCTGGTGATCC
AAGCGGACAAGATCAAGGCCGCAGAGATCCGCAGCGTGTACCACCTGCACCAGGAGGAGATCACCCGCAT
CAAGAAGGAGTGCGAGCGGGAGATCCGCAGGCTGATGGAGGAGATAAAATTTAAAGACAGAGCAGTCTTC
GTGCTGGAGAGAGAGTTAGGGGTTCAAGCCGGGCATGCTCAGAGACTGCAGCTCCAAAAAGAGGCTCTAG
ATGAGCAGCTGTCCCAGGTCCGAGAGGCCGACCGGCACCCGGGCAGCCCCAGACGGGAACTTCCTCATGC
AGCTGGTGCAGGAGACGCTTCAGACCACTCGGGAAGCCCTGAACAGCAGTTGGATGAAAAAGATGCCCGG
CGCTTCCAGCTTAAAATCGCGGAGTTAAGTGCGATTATCCGCAAACTGGAGGACCGCAATGCATTGCTGT
CGGAAGAGAGGAATGAGCTGTTGAAGCGCGTAAGAGAAGCTGAGAGTCAGTACAAGCCTCTGCTGGATAA
AAACAAGCGCCTCAGTCGGAAGAACGAGGATTTGTCTCATGCTTTACGCCGAATGGAAAACAAGTTAAAA
TTTGTCACCCAGGAGAACATAGAAATGAGACAGAGAGCTGGAATCATACGGAGACCCAGTTCCTTGAATG
ACCTTGATCAAAGTCAGGATGAGAGAGAAGTCGATTTCTTGAAGCTTCAGATTGTGGAGCAGCAAAACCT
CATAGATGAACTGTCTAAGACCCTTGAGACCGCCGGCTACGTGAAGAGCGTGTTAGAGCGGGACAAGCTG
TTAAGATTCCGGAAGCAAAGAAAGAAAATGGCAAAACTTCCCAAGCCGGTGGTTGTGGAGACCTTCTTTG
GATACGACGAAGAGGCTTCCCTGGAATCCGACGGCTCCTCCGTCTCTTACCAAACAGACAGGACGGACCA
GACCCCGTGCACCCCGGACGATGACTTGGAGGAGGGCATGGCCAAGGAGGAGACGGAGCTGAGGTTCCGG
CAGCTGACCATGGAGTACCAGGCCCTGCAGCGTGCCTACGCTTTGTTGCAGGAGCAGGTTGGAGGGACGC
TGGACGCAGAGCGAGAAGTTAAGACCCGTGAGCAGCTACAAGCCGAAGTGCAGAGGGCACAGGCGCGGAT
AGAGGACCTGGAGAAGGCCCTGGCGGAGCAGGGGCAGGATATGAAGTGGATTGAAGAGAAGCAGGCACTG
TACCGGAGAAATCAAGAGCTTGTGGAAAAGATCAAACAAATGGAGACGGAAGAGGCTCGGCTCAGACACG
AGGTGCAGGACGCCAGAGACCAAAACGAGCTGCTGGAGTTCAGGATCCTGGAGCTTGAGGAGAGGGAGAG
GAAGTCACCCGCCATCAGCTTCCACCACACGCCCTTCGTGGACGGGAAGAGCCCCCTCCAGGTGTACTGC
GAGGCCGAAGGTGTGACGGACATTGTGGTTGCGGAGCTGATGAAGAAGCTGGACATCCTGGGCGATAACG
CCAACCTGACCAATGAGGAGCAGGTGGTTGTCATACAAGCCAGGACAGTCCTGACCTTGGCCGAAAAGTG
GCTCCAGCAGATTGAGGAGACAGAGGCGGCGCTGCAGCGGAAGATGGTGGATCTGGAGAGCGAGAAGGAG
CTGTTCAGTAAGCAGAAGGGCTACCTGGACGAGGAGCTGGACTACCGGAAACAGGCCTTGGACCAGGCCA
ACAAGCACATCCTGGAGCTGGAAGCCATGCTGTATGATGCCCTGCAGCAGGAGGCCGGGGCTAAGGTGGC
TGAGCTGCTGTCAGAGGAGGAGCGCGAGAAGCTCAAGGTGGCCGTGGAGCAGTGGAAGCGCCAGGTCATG
AGTGAGCTGCGCGAGCGGGACGCCCAGATCCTGCGGGAGCGCATGGAGCTGCTGCAGCTGGCTCAGCAGA
GAATTAAAGAGTTAGAAGAAAGAATAGAAGCTCAGAAGAGACAAATAAAGGAACTGGAGGAAAAGTTTCT
ATTTTTGTTCTTATTTTTCTCCTTAGCTTTCATTCTCTGGTCATAG

Translation (761 aa):
MKELQAVRETLLRQHEAELLRVIKIKDNENQRLQALLSALRDGGPEKVKTVLLSEAKEEAKKGFEVEKVK
MQQEISELKGAKRQVEEALTLVIQADKIKAAEIRSVYHLHQEEITRIKKECEREIRRLMEEIKFKDRAVF
VLERELGVQAGHAQRLQLQKEALDEQLSQVREADRHPGSPRRELPHAAGAGDASDHSGSPEQQLDEKDAR
RFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRLSRKNEDLSHALRRMENKLK
FVTQENIEMRQRAGIIRRPSSLNDLDQSQDEREVDFLKLQIVEQQNLIDELSKTLETAGYVKSVLERDKL
LRFRKQRKKMAKLPKPVVVETFFGYDEEASLESDGSSVSYQTDRTDQTPCTPDDDLEEGMAKEETELRFR
QLTMEYQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQDMKWIEEKQAL
YRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERERKSPAISFHHTPFVDGKSPLQVYC
EAEGVTDIVVAELMKKLDILGDNANLTNEEQVVVIQARTVLTLAEKWLQQIEETEAALQRKMVDLESEKE
LFSKQKGYLDEELDYRKQALDQANKHILELEAMLYDALQQEAGAKVAELLSEEEREKLKVAVEQWKRQVM
SELRERDAQILRERMELLQLAQQRIKELEERIEAQKRQIKELEEKFLFLFLFFSLAFILWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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