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Report for CCDS7970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7970.1 Public Homo sapiens 11 GLYAT 24 110 108 CCDS HistoryNCBI Gene:10249Re-query CCDS DB by CCDS ID:7970.1Re-query CCDS DB by GeneID:10249See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7970.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344743.8 ENSP00000340200.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344743.8Link to Ensembl Protein Viewer:ENSP00000340200.3Re-query CCDS DB by Nucleotide ID:ENST00000344743Re-query CCDS DB by Protein ID:ENSP00000340200
Original member Current member EBI ENST00000529732.5 ENSP00000431688.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529732.5Link to Ensembl Protein Viewer:ENSP00000431688.1Re-query CCDS DB by Nucleotide ID:ENST00000529732Re-query CCDS DB by Protein ID:ENSP00000431688
Original member Current member EBI ENST00000611865.4 ENSP00000484592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611865.4Link to Ensembl Protein Viewer:ENSP00000484592.1Re-query CCDS DB by Nucleotide ID:ENST00000611865Re-query CCDS DB by Protein ID:ENSP00000484592
Original member Current member NCBI NM_201648.3 NP_964011.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_201648.3Link to Protein Sequence:NP_964011.2Re-query CCDS DB by Nucleotide ID:NM_201648Re-query CCDS DB by Protein ID:NP_964011Link to BLAST:NP_964011.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_964011.2 296 Q6IB77-1 296 100% 0 0

Chromosomal Locations for CCDS 7970.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58709766 58710168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58710590 58710761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58712760 58712886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58715316 58715423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58724416 58724496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGATGTTACCATTGCAAGGTGCCCAGATGCTGCAGATGCTGGAGAAATCCTTGAGGAAGAGCCTCCCAG
CATCCTTAAAGGTTTATGGAACTGTCTTTCACATAAACCATGGAAATCCATTCAATCTGAAGGCTGTGGT
GGACAAGTGGCCTGATTTTAATACAGTGGTTGTCTGCCCTCAGGAGCAGGATATGACAGATGACCTTGAT
CACTATACCAATACTTACCAAATCTACTCCAAAGATCCCCAAAACTGTCAGGAATTCCTTGGATCACCAG
AACTCATCAACTGGAAACAGCATTTACAGATTCAAAGTTCACAGCCTAGCCTGAATGAGGCTATACAAAA
TCTTGCAGCCATTAAGTCCTTCAAAGTCAAACAAACACAACGCATTCTCTATATGGCAGCTGAAACAGCC
AAGGAACTGACTCCTTTCCTGCTGAAATCAAAGATTTTATCTCCCAATGGTGGCAAACCCAAGGCCATCA
ACCAAGAGATGTTTAAACTCTCATCCATGGATGTTACCCATGCTCACTTGGTGAATAAATTCTGGCATTT
TGGTGGTAATGAGAGGAGCCAGAGATTCATTGAGCGCTGCATTCAGACCTTTCCCACCTGCTGTCTCCTG
GGGCCTGAGGGGACCCCTGTGTGCTGGGATCTAATGGACCAGACTGGAGAGATGAGAATGGCAGGCACCT
TGCCGGAATACCGGCTCCATGGCCTTGTGACGTATGTCATCTATTCCCACGCCCAGAAATTGGGCAAACT
TGGGTTTCCTGTCTATTCTCATGTAGACTACAGCAATGAAGCTATGCAAAAAATGAGTTACACACTGCAA
CATGTTCCCATTCCCAGAAGCTGGAACCAGTGGAACTGTGTACCTCTGTGA

Translation (296 aa):
MMLPLQGAQMLQMLEKSLRKSLPASLKVYGTVFHINHGNPFNLKAVVDKWPDFNTVVVCPQEQDMTDDLD
HYTNTYQIYSKDPQNCQEFLGSPELINWKQHLQIQSSQPSLNEAIQNLAAIKSFKVKQTQRILYMAAETA
KELTPFLLKSKILSPNGGKPKAINQEMFKLSSMDVTHAHLVNKFWHFGGNERSQRFIERCIQTFPTCCLL
GPEGTPVCWDLMDQTGEMRMAGTLPEYRLHGLVTYVIYSHAQKLGKLGFPVYSHVDYSNEAMQKMSYTLQ
HVPIPRSWNQWNCVPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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