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Report for CCDS8222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8222.1 Public Homo sapiens 11 RELT 24 110 108 CCDS HistoryNCBI Gene:84957Re-query CCDS DB by CCDS ID:8222.1Re-query CCDS DB by GeneID:84957See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8222.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000064780.7 ENSP00000064780.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000064780.7Link to Ensembl Protein Viewer:ENSP00000064780.2Re-query CCDS DB by Nucleotide ID:ENST00000064780Re-query CCDS DB by Protein ID:ENSP00000064780
Original member Current member EBI ENST00000393580.2 ENSP00000377207.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393580.2Link to Ensembl Protein Viewer:ENSP00000377207.2Re-query CCDS DB by Nucleotide ID:ENST00000393580Re-query CCDS DB by Protein ID:ENSP00000377207
Original member Current member NCBI NM_032871.4 NP_116260.2 Accepted alive Link to Nucleotide Sequence:NM_032871.4Link to Protein Sequence:NP_116260.2Re-query CCDS DB by Nucleotide ID:NM_032871Re-query CCDS DB by Protein ID:NP_116260Link to BLAST:NP_116260.2
Original member Current member NCBI NM_152222.2 NP_689408.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152222.2Link to Protein Sequence:NP_689408.1Re-query CCDS DB by Nucleotide ID:NM_152222Re-query CCDS DB by Protein ID:NP_689408Link to BLAST:NP_689408.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116260.2 430 Q969Z4 430 100% 0 0
NP_689408.1 430 Q969Z4 430 100% 0 0

Chromosomal Locations for CCDS 8222.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73389137 73389181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73390551 73390625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73390755 73390921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73391144 73391223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73392211 73392468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73393837 73393917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73394236 73394317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73394477 73394734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73395087 73395285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73395444 73395491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGAAGCCAAGTCTGCTGTGCCGGCCCCTGTCCTGCTTCCTTATGCTGCTGCCCTGGCCTCTCGCCACCC
TGACATCAACAACCCTTTGGCAGTGCCCACCTGGGGAGGAGCCCGACCTGGACCCAGGGCAGGGCACATT
ATGCAGGCCCTGCCCCCCAGGCACCTTCTCAGCTGCATGGGGCTCCAGCCCATGCCAGCCCCATGCCCGT
TGCAGCCTTTGGAGGAGGCTGGAGGCCCAGGTGGGCATGGCAACTCGAGATACACTCTGTGGAGACTGCT
GGCCTGGGTGGTTTGGGCCTTGGGGGGTTCCCCGCGTTCCATGTCAACCATGTTCCTGGGCACCTCTGGG
TACTCATGGCTGTGATGAGTGGGGGCGGCGGGCCCGACGTGGCGTGGAGGTGGCAGCAGGGGCCAGCAGC
GGTGGTGAGACACGGCAGCCTGGGAACGGCACCCGGGCAGGTGGCCCAGAGGAGACAGCCGCCCAGTACG
CGGTCATCGCCATCGTCCCTGTCTTCTGCCTCATGGGGCTGTTGGGCATCCTGGTGTGCAACCTCCTCAA
GCGGAAGGGCTACCACTGCACGGCGCACAAGGAGGTCGGGCCCGGCCCTGGAGGTGGAGGCAGTGGAATC
AACCCTGCCTACCGGACTGAGGATGCCAATGAGGACACCATTGGGGTCCTGGTGCGCTTGATCACAGAGA
AGAAAGAGAATGCTGCGGCCCTGGAGGAGCTGCTGAAAGAGTACCACAGCAAACAGCTGGTGCAGACGAG
CCACAGGCCTGTGTCCAAGCTGCCGCCAGCGCCCCCGAACGTGCCACACATCTGCCCGCACCGCCACCAT
CTCCACACCGTGCAGGGCCTGGCCTCGCTCTCTGGCCCCTGCTGCTCCCGCTGTAGCCAGAAGAAGTGGC
CCGAGGTGCTGCTGTCCCCTGAGGCTGTAGCCGCCACTACTCCTGTTCCCAGCCTTCTGCCTAACCCGAC
CAGGGTTCCCAAGGCCGGGGCCAAGGCAGGGCGTCAGGGCGAGATCACCATCTTGTCTGTGGGCAGGTTC
CGCGTGGCTCGAATTCCTGAGCAGCGGACAAGTTCAATGGTGTCTGAGGTGAAGACCATCACGGAGGCTG
GGCCCTCGTGGGGTGATCTCCCTGACTCCCCACAGCCTGGCCTCCCCCCTGAGCAGCAGGCCCTGCTAGG
AAGTGGCGGAAGCCGTACAAAGTGGCTGAAGCCCCCAGCAGAGAACAAGGCCGAGGAGAACCGCTATGTG
GTCCGGCTAAGTGAGAGCAACCTGGTCATCTGA

Translation (430 aa):
MKPSLLCRPLSCFLMLLPWPLATLTSTTLWQCPPGEEPDLDPGQGTLCRPCPPGTFSAAWGSSPCQPHAR
CSLWRRLEAQVGMATRDTLCGDCWPGWFGPWGVPRVPCQPCSWAPLGTHGCDEWGRRARRGVEVAAGASS
GGETRQPGNGTRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGI
NPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPAPPNVPHICPHRHH
LHTVQGLASLSGPCCSRCSQKKWPEVLLSPEAVAATTPVPSLLPNPTRVPKAGAKAGRQGEITILSVGRF
RVARIPEQRTSSMVSEVKTITEAGPSWGDLPDSPQPGLPPEQQALLGSGGSRTKWLKPPAENKAEENRYV
VRLSESNLVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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