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Report for CCDS8275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8275.1 Public Homo sapiens 11 HIKESHI 24 110 108 CCDS HistoryNCBI Gene:51501Re-query CCDS DB by CCDS ID:8275.1Re-query CCDS DB by GeneID:51501See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8275.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278483.8 ENSP00000278483.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278483.8Link to Ensembl Protein Viewer:ENSP00000278483.3Re-query CCDS DB by Nucleotide ID:ENST00000278483Re-query CCDS DB by Protein ID:ENSP00000278483
Original member Current member NCBI NM_016401.4 NP_057485.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016401.4Link to Protein Sequence:NP_057485.2Re-query CCDS DB by Nucleotide ID:NM_016401Re-query CCDS DB by Protein ID:NP_057485Link to BLAST:NP_057485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057485.2 197 Q53FT3 197 100% 0 0

Chromosomal Locations for CCDS 8275.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86302449 86302478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86306245 86306482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86337379 86337530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86344603 86344721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86345584 86345638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGTTTGGCTGCTTGGTGGCGGGGAGGCTGGTGCAAACAGCTGCACAGCAAGTGGCAGAGGATAAATTTG
TTTTTGACTTACCTGATTATGAAAGTATCAACCATGTTGTGGTTTTTATGCTGGGAACAATCCCATTTCC
TGAGGGAATGGGAGGATCTGTCTACTTTTCTTATCCTGATTCAAATGGAATGCCAGTATGGCAACTCCTA
GGATTTGTCACGAATGGGAAGCCAAGTGCCATCTTCAAAATTTCAGGTCTTAAATCTGGAGAAGGAAGCC
AACATCCTTTTGGAGCCATGAATATTGTCCGAACTCCATCTGTTGCTCAGATTGGAATTTCAGTGGAATT
ATTAGACAGTATGGCTCAGCAGACTCCTGTAGGTAATGCTGCTGTATCCTCAGTTGACTCATTCACTCAG
TTCACACAAAAGATGTTGGACAATTTCTACAATTTTGCTTCATCATTTGCTGTCTCTCAGGCCCAGATGA
CACCAAGCCCATCTGAAATGTTCATTCCGGCAAATGTGGTTCTGAAATGGTATGAAAACTTTCAAAGACG
ACTAGCACAGAACCCTCTCTTTTGGAAAACATAA

Translation (197 aa):
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYESINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGMPVWQLL
GFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDSMAQQTPVGNAAVSSVDSFTQ
FTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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