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Report for CCDS8472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8472.1 Public Homo sapiens 11 TIRAP 24 110 108 CCDS HistoryNCBI Gene:114609Re-query CCDS DB by CCDS ID:8472.1Re-query CCDS DB by GeneID:114609See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8472.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392679.6 ENSP00000376446.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392679.6Link to Ensembl Protein Viewer:ENSP00000376446.1Re-query CCDS DB by Nucleotide ID:ENST00000392679Re-query CCDS DB by Protein ID:ENSP00000376446
Original member Current member EBI ENST00000392680.6 ENSP00000376447.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392680.6Link to Ensembl Protein Viewer:ENSP00000376447.2Re-query CCDS DB by Nucleotide ID:ENST00000392680Re-query CCDS DB by Protein ID:ENSP00000376447
Original member Current member EBI ENST00000479770.2 ENSP00000436967.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000479770.2Link to Ensembl Protein Viewer:ENSP00000436967.1Re-query CCDS DB by Nucleotide ID:ENST00000479770Re-query CCDS DB by Protein ID:ENSP00000436967
Original member Current member EBI ENST00000700488.1 ENSP00000515016.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700488.1Link to Ensembl Protein Viewer:ENSP00000515016.1Re-query CCDS DB by Nucleotide ID:ENST00000700488Re-query CCDS DB by Protein ID:ENSP00000515016
Original member Current member EBI ENST00000700489.1 ENSP00000515017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700489.1Link to Ensembl Protein Viewer:ENSP00000515017.1Re-query CCDS DB by Nucleotide ID:ENST00000700489Re-query CCDS DB by Protein ID:ENSP00000515017
Original member Current member EBI ENST00000700490.1 ENSP00000515018.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700490.1Link to Ensembl Protein Viewer:ENSP00000515018.1Re-query CCDS DB by Nucleotide ID:ENST00000700490Re-query CCDS DB by Protein ID:ENSP00000515018
Original member Current member NCBI NM_001039661.2 NP_001034750.1 Accepted alive Link to Nucleotide Sequence:NM_001039661.2Link to Protein Sequence:NP_001034750.1Re-query CCDS DB by Nucleotide ID:NM_001039661Re-query CCDS DB by Protein ID:NP_001034750Link to BLAST:NP_001034750.1
Original member Current member NCBI NM_001318777.2 NP_001305706.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318777.2Link to Protein Sequence:NP_001305706.1Re-query CCDS DB by Nucleotide ID:NM_001318777Re-query CCDS DB by Protein ID:NP_001305706Link to BLAST:NP_001305706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034750.1 221 P58753-1 221 100% 0 0
NP_001305706.1 221 P58753-1 221 100% 0 0

Chromosomal Locations for CCDS 8472.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 126290895 126290961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126292477 126293055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126293668 126293687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGCATCATCGACCTCCCTCCCAGCTCCTGGCTCTCGGCCTAAGAAGCCTCTAGGCAAGATGGCTGACT
GGTTCAGGCAGACCCTGCTGAAGAAGCCCAAGAAGAGGCCCAACTCCCCAGAAAGCACCTCCAGCGATGC
TTCACAGCCTACCTCACAGGACAGCCCACTACCCCCAAGCCTCAGCTCAGTCACGTCTCCCAGCCTGCCA
CCCACACATGCGAGTGACAGTGGCAGTAGTCGCTGGAGCAAAGACTATGACGTCTGCGTGTGCCACAGTG
AGGAAGACCTGGTGGCCGCCCAGGACCTGGTCTCCTACTTGGAAGGCAGCACTGCCAGCCTGCGCTGCTT
CCTGCAACTCCGGGATGCAACCCCAGGCGGCGCTATAGTGTCCGAGCTGTGCCAGGCACTGAGCAGTAGT
CACTGCCGGGTGCTGCTCATCACGCCGGGCTTCCTTCAGGACCCCTGGTGCAAGTACCAGATGCTGCAGG
CCCTGACCGAGGCTCCAGGGGCCGAGGGCTGCACCATCCCCCTGCTGTCGGGCCTCAGCAGAGCTGCCTA
CCCACCTGAGCTCCGATTCATGTACTACGTCGATGGCAGGGGCCCTGATGGTGGCTTTCGTCAAGTCAAA
GAAGCTGTCATGCGTTATCTGCAGACACTCAGTTGA

Translation (221 aa):
MASSTSLPAPGSRPKKPLGKMADWFRQTLLKKPKKRPNSPESTSSDASQPTSQDSPLPPSLSSVTSPSLP
PTHASDSGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSS
HCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVK
EAVMRYLQTLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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