NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48738.1 Public Mus musculus 10 Vmn2r87 23 108 98 CCDS HistoryNCBI Gene:625131Re-query CCDS DB by CCDS ID:48738.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164227.3 ENSMUSP00000129215.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164227.3Link to Ensembl Protein Viewer:ENSMUSP00000129215.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164227Re-query CCDS DB by Protein ID:ENSMUSP00000129215
Original member Current member NCBI NM_001103366.1 NP_001096836.1 Accepted alive Link to Nucleotide Sequence:NM_001103366.1Link to Protein Sequence:NP_001096836.1Re-query CCDS DB by Nucleotide ID:NM_001103366Re-query CCDS DB by Protein ID:NP_001096836Link to BLAST:NP_001096836.1

Chromosomal Locations for CCDS 48738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 130471821 130472725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130476102 130476225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130477378 130477602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130478423 130479226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130479707 130479989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130497174 130497379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGAAGAAAATGTGTGTTTTAACTACTTCATTTTTATTTCTGAAGTTTTCTCTCATCTTGTGCTGTTTGA
CAGAACCCATTTGCTTTTGGAGGATAAAAGATAGTGAATATAATGATGGAGAGTTGCAAAGTGAGTGTGG
TTTCTTCCTTTGGACAATGGAGAAACCTATGGAAGATGATTTTTATAATGTAAGGTTTGATTTTAGAATA
CCAGCAAGTGAATACGAGTTTGTTCTGGTAATGTTTTTTGCTACTGATGAGATCAACAAGAATCCTGATC
TTTTACCAAACACATCTTTGGTATTCTCTGTCATTGGTGGTAAATGTCAAGATTCTTTGGGACTTCTGGG
CGAAGAATATATACTAATAAATGACAGTCTGAATTATGTTAATTATGTCTGTAAAGCAGATGATACATGT
GTCATAGACCTTACAGGACCATCATGGAAAACATCCTTAAAACTGGCAATTGATTCTTGGACACCAAAGG
TTTTCTTTGGACCATTTAATCCTAACCTAAGTGACCATGACCGGTTTCCCTATGTCCATCAGGTAGCCAC
CAAGGACACACATTTGTCCCATGGCATGGTCTCCTTGATGCTTCATTTTAGATGGACTTGGATAGGACTG
GTCATTTCAGATGATGACCAGGGTATTCAGCTTCATTCAGATTTAAGAGAAGAAAGCCAAAGGCACGGTA
TTTGTTTAGCTTTTGTGAATGTGATCCCAGAAACCATGAAGATATACATGACAAGGGGTAATATGTATGA
TAAACAAATTATGACATCTTCAGCAAAGGTTGTTATCATTTATGGTGAAATGAACTCTACACTAGAAATT
AGCTTTAGAAGATGGGTATATTTAGGTGCTCGGAGGATCTGGATCACAACCTCACAATGGGATGTTATCA
CAAATAAAAAAGATTTCAGCCTTGATCTCTTCCATGGTACTGTCACTTTTGCACACCACAAAGGTTGGAT
TGCTAAATTTAAGAATTTTATGCAAACAATGAACACTTCCAAATACCCAATAAACATTTCTCAGTCAGTA
CTGAGGTGGAATTATTTTAATTGTTCAGTCTCTAAGAACAGCATTAAAATGGATCATTTCACATGCAAAA
ACCCATTGGAATGGACAGCACTGCACAACTATGACATGGCCCTGAGTGATGAAGGTTACAATTTGTATAA
TGCTGTTTATGCTGTGGCCCACGCCTACCATGAACACATTCTTCATCAAGTAGAGTCTCAAAAAATGGCA
GAAGACAAAGGAAAATACACAGAATGTCAGCAGTTGGCTCCCTTGCTGAAAACTAGAGTATTTACTAATC
CTGTTGGAGAACTGGTGAACATGAATCAAAGGGAATATCAGTGTGCAGAGTATGACATTTTCATCATTTG
GAATTTTCCACAAGGCCTTGGATTAAAAGTGAAAATAGGAAACTATTTTCCTTGTTTCCCACGGAGTCAA
CAACTACATATATCCGAAGATTTAGAATGGGTCACAGGAGGAACATTAGTACCCTCCTCCATGTGCAGTG
TGACATGTACTCCTGGATTCAGGAAAATTCATCAGAAAGAAACAGCAGACTGCTGCTTTGATTGTGTTCA
GTGCCCAGAAAATGAGGTTTCCAATGAAACAGCAGATATGGAACAGTGTGTGAGGTGTCCAGATGATAAG
TATGCCAACTTAGAGCAATCCCACTGCCTCCAAAGAACTGTGTCATTTCTGGCTTATGAAGATCCATTGG
GGATGGTTCTAGGAAGCATGGCACTGTCCTCCTCAGCCATCACAATTCTAGTACTAGTCACTTTTATGAA
GTACAAGGATACTCCCATTGTGAAGGCCAATAACTGCATTCTCAGCTACATCCTACTCATCTCTCTAGTC
TTTTGCTTTCTCTGCTCATTGCTCTTCATTGAACATCCCAACCAGGTCACCTGCATCCTGCAGCAGACCA
CATTTGGACTATTTTTCACTGTGGCTGTTTCTACAGTGTTGGCCAAAACAATAACTGTGGTCATGGCTTT
CAAGCTCACTACTCCAGGAAAAAGGATGAGAGGGATGATGACAGGGGCACCTAAGTTGGTCATTCCCATT
TGTACCCTAATCCAACTTGTTCTCTGTGGAATCTGGTTGTTAACATCTCCTCCCTTTATTGACAGAGATA
TACAATCTGAACATGGGAAGACTGTCATTTTTTGCAACAAAGGCTCTGTCATTGCCTTCCATGTTGTCCT
GGGATACTTGGGTTCCTTGGCTCTGGGGAGCTTCACTGTGGCTTTCCTGGCTAGGAACCTTCCTGACAGA
TTCAATGAAGCCAAGTTCCTAACTTTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACCTTCCTTCCTG
TCTACCACAGCACCAGGGGGAAGATCATGGTGGTTGTGGAGGTCTTCTCCATCTTGGCTTCTAGTGCAGG
GTTGCTAGGGTGTATCTTTGTCCCAAAGTGTTATGTTATTTTAGTTAGACCAGATTCAAATTTTATACAG
AAGTACAAAGGTAAATTGCTTTATTGA

Translation (848 aa):
MKKMCVLTTSFLFLKFSLILCCLTEPICFWRIKDSEYNDGELQSECGFFLWTMEKPMEDDFYNVRFDFRI
PASEYEFVLVMFFATDEINKNPDLLPNTSLVFSVIGGKCQDSLGLLGEEYILINDSLNYVNYVCKADDTC
VIDLTGPSWKTSLKLAIDSWTPKVFFGPFNPNLSDHDRFPYVHQVATKDTHLSHGMVSLMLHFRWTWIGL
VISDDDQGIQLHSDLREESQRHGICLAFVNVIPETMKIYMTRGNMYDKQIMTSSAKVVIIYGEMNSTLEI
SFRRWVYLGARRIWITTSQWDVITNKKDFSLDLFHGTVTFAHHKGWIAKFKNFMQTMNTSKYPINISQSV
LRWNYFNCSVSKNSIKMDHFTCKNPLEWTALHNYDMALSDEGYNLYNAVYAVAHAYHEHILHQVESQKMA
EDKGKYTECQQLAPLLKTRVFTNPVGELVNMNQREYQCAEYDIFIIWNFPQGLGLKVKIGNYFPCFPRSQ
QLHISEDLEWVTGGTLVPSSMCSVTCTPGFRKIHQKETADCCFDCVQCPENEVSNETADMEQCVRCPDDK
YANLEQSHCLQRTVSFLAYEDPLGMVLGSMALSSSAITILVLVTFMKYKDTPIVKANNCILSYILLISLV
FCFLCSLLFIEHPNQVTCILQQTTFGLFFTVAVSTVLAKTITVVMAFKLTTPGKRMRGMMTGAPKLVIPI
CTLIQLVLCGIWLLTSPPFIDRDIQSEHGKTVIFCNKGSVIAFHVVLGYLGSLALGSFTVAFLARNLPDR
FNEAKFLTFSMLVFCSVWITFLPVYHSTRGKIMVVVEVFSILASSAGLLGCIFVPKCYVILVRPDSNFIQ
KYKGKLLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH