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Report for CCDS8587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8587.1 Public Homo sapiens 12 FOXJ2 24 110 108 CCDS HistoryNCBI Gene:55810Re-query CCDS DB by CCDS ID:8587.1Re-query CCDS DB by GeneID:55810See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8587.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000162391.8 ENSP00000162391.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000162391.8Link to Ensembl Protein Viewer:ENSP00000162391.3Re-query CCDS DB by Nucleotide ID:ENST00000162391Re-query CCDS DB by Protein ID:ENSP00000162391
Original member Current member NCBI NM_018416.3 NP_060886.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018416.3Link to Protein Sequence:NP_060886.1Re-query CCDS DB by Nucleotide ID:NM_018416Re-query CCDS DB by Protein ID:NP_060886Link to BLAST:NP_060886.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060886.1 574 Q9P0K8-1 574 100% 0 0

Chromosomal Locations for CCDS 8587.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8039833 8040165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8042658 8042732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8043701 8043769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8043951 8044091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8044760 8044958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8047882 8048289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8048697 8048798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8049362 8049571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8050522 8050620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8052762 8052850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGCTTCTGACCTAGAGAGTAGCCTCACCTCCATAGACTGGCTCCCCCAGCTGACCCTCCGAGCTACCA
TTGAGAAGCTTGGAAGTGCCTCCCAGGCTGGGCCTCCCGGGAGCAGCCGCAAGTGTTCACCAGGGTCACC
CACAGATCCTAATGCCACCCTGAGCAAAGACGAGGCAGCAGTGCACCAGGACGGCAAGCCACGATACAGC
TATGCCACTCTCATCACCTATGCCATCAACTCCTCTCCAGCCAAGAAGATGACCCTCAGCGAGATTTACC
GCTGGATCTGTGATAACTTCCCCTATTACAAGAATGCTGGCATTGGTTGGAAGAATTCAATACGGCACAA
CCTTTCTCTCAACAAGTGTTTCCGGAAGGTGCCCAGACCTCGGGATGACCCTGGGAAGGGTTCCTATTGG
ACAATTGACACCTGCCCTGACATTTCCCGAAAGAGAAGACACCCTCCAGATGATGATCTGTCCCAAGACT
CACCAGAACAGGAGGCAAGCAAGAGCCCACGGGGAGGCGTTGCAGGGAGTGGAGAAGCCTCACTGCCTCC
TGAGGGGAATCCGCAGATGTCACTTCAGAGCCCCACATCTATAGCCAGCTACAGCCAGGGCACAGGATCT
GTGGATGGTGGAGCAGTGGCAGCAGGGGCTTCAGGCCGAGAAAGTGCTGAGGGTCCCCCTCCCCTCTATA
ACACCAACCATGACTTTAAATTCTCCTACTCAGAGATCAACTTTCAGGATCTAAGCTGGTCCTTCCGCAA
CCTCTATAAGTCCATGCTGGAGAAGTCCTCTTCCTCCTCTCAGCACGGCTTTTCTTCTCTCCTGGGGGAC
ATCCCACCCTCGAACAACTACTACATGTATCAGCAGCAGCAGCCACCGCCACCTCAACAGCAGCAGCAGC
AGCAGCAGCCGCCACAGCCACCTCCCCAGCAGTCCCAGCCACAGCAGCAGCAGGCACCTGCCCAGGGCCC
CTCAGCTGTAGGGGGTGCTCCTCCACTGCACACCCCAAGCACAGATGGTTGTACCCCACCAGGGGGAAAG
CAAGCTGGGGCGGAAGGCTATGGGCCTCCCCCTGTAATGGCCATGCATCCACCCCCGCTGCAGCATGGAG
GCTACCACCCTCATCAGCACCATCCCCACTCCCACCCTGCCCAGCAGCCACCACCTCCACAGCCACAGGC
ACAAGGCCAGGCTCCCATCAACAACACTGGCTTTGCCTTTCCTTCTGACTGGTGCTCTAATATTGACTCT
TTAAAGGAAAGCTTCAAGATGGTGAATCGGCTCAATTGGTCCAGCATTGAGCAGTCACAATTCTCAGAAC
TGATGGAGAGTCTACGACAGGCAGAGCAGAAGAACTGGACCCTCGACCAGCATCACATTGCCAATCTGTG
TGACTCCCTCAACCACTTCCTTACTCAGACTGGTCACGTGCCCCCTCAAGGGGGTACCCACCGCCCACCA
GCCCCTGCCCGTATTGCTGACTCCTGTGCCCTCACCAGTGGCAAACAGGAGTCAGCCATGAGCCAAGTGA
ACTCTTATGGGCACCCACAAGCTCCCCACCTCTACCCTGGCCCATCACCAATGTACCCAATCCCCACCCA
GGACTCAGCAGGATACAATCGCCCAGCACACCATATGGTCCCTCGGCCATCAGTGCCACCTCCTGGTGCC
AATGAGGAGATCCCTGATGACTTCGACTGGGACTTGATCACTTAG

Translation (574 aa):
MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPGSPTDPNATLSKDEAAVHQDGKPRYS
YATLITYAINSSPAKKMTLSEIYRWICDNFPYYKNAGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYW
TIDTCPDISRKRRHPPDDDLSQDSPEQEASKSPRGGVAGSGEASLPPEGNPQMSLQSPTSIASYSQGTGS
VDGGAVAAGASGRESAEGPPPLYNTNHDFKFSYSEINFQDLSWSFRNLYKSMLEKSSSSSQHGFSSLLGD
IPPSNNYYMYQQQQPPPPQQQQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGK
QAGAEGYGPPPVMAMHPPPLQHGGYHPHQHHPHSHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDS
LKESFKMVNRLNWSSIEQSQFSELMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHVPPQGGTHRPP
APARIADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPMYPIPTQDSAGYNRPAHHMVPRPSVPPPGA
NEEIPDDFDWDLIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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