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Report for CCDS44853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44853.1 Public Homo sapiens 12 PTHLH 24 110 108 CCDS HistoryNCBI Gene:5744Re-query CCDS DB by CCDS ID:44853.1Re-query CCDS DB by GeneID:5744See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395872.5 ENSP00000379213.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395872.5Link to Ensembl Protein Viewer:ENSP00000379213.1Re-query CCDS DB by Nucleotide ID:ENST00000395872Re-query CCDS DB by Protein ID:ENSP00000379213
Original member Current member EBI ENST00000539239.5 ENSP00000441571.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539239.5Link to Ensembl Protein Viewer:ENSP00000441571.1Re-query CCDS DB by Nucleotide ID:ENST00000539239Re-query CCDS DB by Protein ID:ENSP00000441571
Original member Current member EBI ENST00000545234.6 ENSP00000441765.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000545234.6Link to Ensembl Protein Viewer:ENSP00000441765.1Re-query CCDS DB by Nucleotide ID:ENST00000545234Re-query CCDS DB by Protein ID:ENSP00000441765
Original member Current member NCBI NM_198965.2 NP_945316.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198965.2Link to Protein Sequence:NP_945316.1Re-query CCDS DB by Nucleotide ID:NM_198965Re-query CCDS DB by Protein ID:NP_945316Link to BLAST:NP_945316.1
Original member Current member NCBI NM_198966.2 NP_945317.1 Accepted alive Link to Nucleotide Sequence:NM_198966.2Link to Protein Sequence:NP_945317.1Re-query CCDS DB by Nucleotide ID:NM_198966Re-query CCDS DB by Protein ID:NP_945317Link to BLAST:NP_945317.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945316.1 177 P12272-1 177 100% 0 0
NP_945317.1 177 P12272-1 177 100% 0 0

Chromosomal Locations for CCDS 44853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 27958559 27958568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27963348 27963770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27969394 27969494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGCAGCGGAGACTGGTTCAGCAGTGGAGCGTCGCGGTGTTCCTGCTGAGCTACGCGGTGCCCTCCTGCG
GGCGCTCGGTGGAGGGTCTCAGCCGCCGCCTCAAAAGAGCTGTGTCTGAACATCAGCTCCTCCATGACAA
GGGGAAGTCCATCCAAGATTTACGGCGACGATTCTTCCTTCACCATCTGATCGCAGAAATCCACACAGCT
GAAATCAGAGCTACCTCGGAGGTGTCCCCTAACTCCAAGCCCTCTCCCAACACAAAGAACCACCCCGTCC
GATTTGGGTCTGATGATGAGGGCAGATACCTAACTCAGGAAACTAACAAGGTGGAGACGTACAAAGAGCA
GCCGCTCAAGACACCTGGGAAGAAAAAGAAAGGCAAGCCCGGGAAACGCAAGGAGCAGGAAAAGAAAAAA
CGGCGAACTCGCTCTGCCTGGTTAGACTCTGGAGTGACTGGGAGTGGGCTAGAAGGGGACCACCTGTCTG
ACACCTCCACAACGTCGCTGGAGCTCGATTCACGGAGGCATTGA

Translation (177 aa):
MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFLHHLIAEIHTA
EIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKK
RRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSRRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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