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Report for CCDS66545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66545.1 Public Homo sapiens 13 RUBCNL 24 110 108 CCDS HistoryNCBI Gene:80183Re-query CCDS DB by CCDS ID:66545.1Re-query CCDS DB by GeneID:80183See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378784.8 ENSP00000368061.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378784.8Link to Ensembl Protein Viewer:ENSP00000368061.4Re-query CCDS DB by Nucleotide ID:ENST00000378784Re-query CCDS DB by Protein ID:ENSP00000368061
Original member Current member NCBI NM_001286763.3 NP_001273692.1 Accepted alive Link to Nucleotide Sequence:NM_001286763.3Link to Protein Sequence:NP_001273692.1Re-query CCDS DB by Nucleotide ID:NM_001286763Re-query CCDS DB by Protein ID:NP_001273692Link to BLAST:NP_001273692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273692.1 595 Q9H714-3 595 100% 0 0

Chromosomal Locations for CCDS 66545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 46343385 46343497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46344741 46344831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46345447 46345600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46349286 46349347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46350113 46350351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46356432 46356496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46359486 46359631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46361441 46361573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46362538 46362598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46363115 46363213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46368042 46368249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46368733 46368815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46371941 46372210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46377890 46377953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGGTTTCCAATCATTACTTTCTCCTCTGTGTCAATCTGCCTCTTCGAGAAATTCATACTCCTGGCCCTT
CACCTTCGTGCCTCGGGGACTCCCTGGCAGAGACAACGTTGTCTGAGGATACCACAGACTCCGTTGGCAG
CGCTTCTCCCCATGGCTCGAGTGAAAAGAGTAGCAGCTTCTCTCTGTCCTCAACAGAGGTACACATGGTC
CGCCCAGGATACTCTCATCGGGTGTCTCTGCCCACAAGCCCTGGGATTTTGGCCACCTCCCCATATCCTG
AGACTGACAGTGCTTTTTTTGAGCCTTCCCATCTGACATCTGCTGCTGATGAAGGTGCTGTTCAAGTCAG
TAGAAGAACCATTTCTTCGAATTCCTTCTCACCAGAGGTATTTGTGCTGCCTGTTGATGTAGAAAAGGAA
AATGCCCACTTTTATGTTGCAGATATGATTATATCAGCAATGGAGAAAATGAAGTGTAACATTCTGAGTC
AACAGCAGACAGAGAGCTGGAGTAAAGAAGTCAGTGGGTTACTTGGGAGTGATCAGCCTGACTCTGAAAT
GACTTTTGATACCAACATAAAGCAAGAGTCTGGGTCTTCTACTTCTTCATACAGTGGCTATGAAGGTTGT
GCTGTGTTACAGGTCAGCCCAGTGACTGAAACACGTACTTACCATGATGTGAAAGAGATTTGCAAATGCG
ATGTTGATGAATTTGTTATTTTAGAGCTTGGAGATTTTAATGATATCACAGAAACCTGTAGCTGTTCCTG
CAGCTCCTCTAAGAGTGTCACTTATGAGCCAGACTTCAATTCTGCAGAACTATTAGCCAAAGAGCTGTAC
CGCGTGTTCCAGAAGTGCTGGATACTGTCAGTAGTTAATTCTCAGCTGGCAGGTTCCCTGAGTGCAGCTG
GCTCGATAGTCGTAAATGAAGAGTGTGTCCGAAAAGACTTTGAATCCAGTATGAATGTAGTACAGGAAAT
TAAATTTAAGTCTAGGATCAGAGGGACTGAAGACTGGGCTCCTCCTAGATTTCAAATCATATTTAATATT
CATCCACCACTCAAGAGGGACCTTGTGGTGGCAGCCCAGAATTTTTTCTGTGCCGGCTGTGGAACTCCAG
TAGAGCCTAAGTTTGTGAAGCGGCTCCGGTACTGCGAATACCTAGGGAAGTATTTCTGTGACTGCTGCCA
CTCATATGCAGAGTCGTGCATCCCTGCCCGAATCCTGATGATGTGGGACTTCAAGAAGTACTACGTCAGC
AATTTCTCCAAACAGCTGCTCGACAGCATATGGCACCAGCCCATTTTCAATTTGCTGAGCATCGGCCAAA
GCCTGTATGCGAAAGCCAAGGAGCTGGACAGAGTGAAGGAAATTCAGGAGCAGCTCTTCCATATCAAGAA
GCTGTTGAAGACCTGTAGGTTTGCTAACAGTGCATTAAAGGAGTTCGAGCAGGTGCCGGGACACTTGACT
GATGAGCTCCACCTGTTCTCCCTTGAGGACCTGGTCAGGATCAAGAAAGGGCTGCTGGCACCCTTACTCA
AGGACATTCTGAAAGCTTCCCTTGCACATGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTTTATTTG
TGAATTTTGCCAGAATACGACTGTCATCTTCCCATTTCAGACAGCAACATGTAGAAGATGTTCAGCGTGC
AGGGCTTGCTTTCACAAACAGTGCTTCCAGTCCTCCGAGTGCCCCCGGTGTGCGAGGATCACAGCGAGGA
GAAAACTTCTGGAAAGTGTGGCCTCTGCAGCAACATGA

Translation (595 aa):
MVSNHYFLLCVNLPLREIHTPGPSPSCLGDSLAETTLSEDTTDSVGSASPHGSSEKSSSFSLSSTEVHMV
RPGYSHRVSLPTSPGILATSPYPETDSAFFEPSHLTSAADEGAVQVSRRTISSNSFSPEVFVLPVDVEKE
NAHFYVADMIISAMEKMKCNILSQQQTESWSKEVSGLLGSDQPDSEMTFDTNIKQESGSSTSSYSGYEGC
AVLQVSPVTETRTYHDVKEICKCDVDEFVILELGDFNDITETCSCSCSSSKSVTYEPDFNSAELLAKELY
RVFQKCWILSVVNSQLAGSLSAAGSIVVNEECVRKDFESSMNVVQEIKFKSRIRGTEDWAPPRFQIIFNI
HPPLKRDLVVAAQNFFCAGCGTPVEPKFVKRLRYCEYLGKYFCDCCHSYAESCIPARILMMWDFKKYYVS
NFSKQLLDSIWHQPIFNLLSIGQSLYAKAKELDRVKEIQEQLFHIKKLLKTCRFANSALKEFEQVPGHLT
DELHLFSLEDLVRIKKGLLAPLLKDILKASLAHVAGCELCQGKGFICEFCQNTTVIFPFQTATCRRCSAC
RACFHKQCFQSSECPRCARITARRKLLESVASAAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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