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Report for CCDS81773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81773.1 Public Homo sapiens 13 LMO7 24 110 108 CCDS HistoryNCBI Gene:4008Re-query CCDS DB by CCDS ID:81773.1Re-query CCDS DB by GeneID:4008See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81773.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377534.8 ENSP00000366757.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377534.8Link to Ensembl Protein Viewer:ENSP00000366757.4Re-query CCDS DB by Nucleotide ID:ENST00000377534Re-query CCDS DB by Protein ID:ENSP00000366757
Original member Current member NCBI NM_001306080.2 NP_001293009.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001306080.2Link to Protein Sequence:NP_001293009.1Re-query CCDS DB by Nucleotide ID:NM_001306080Re-query CCDS DB by Protein ID:NP_001293009Link to BLAST:NP_001293009.1

Chromosomal Locations for CCDS 81773.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 75636658 75636726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75713182 75713252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75727029 75727098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75760932 75761038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75795401 75795431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75796636 75796749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75800684 75800882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75804289 75804541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75805479 75805760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75807480 75808199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75809154 75809183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75817161 75817278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75819393 75819535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75821177 75821609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75823565 75823873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75833051 75833165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75834226 75834387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75835233 75835339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75836397 75836457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75838140 75838196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75840085 75840110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75840391 75840495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75841109 75841201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75841628 75841983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75842851 75842916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75845327 75845379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75849079 75849292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75853092 75853388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75855260 75855368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75856506 75856608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75857921 75857943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4896 nt):
ATGGAAGGGCTGGAGGAGGCAGAGGCCAACTGCTCCGTGGCGTTCGCTGAGGCTCAGAGATGGGTGGAGG
CAGTAACAGAGAAGAATTTTGAAACAAAAGATTTTCGAGCCTCTCTAGAAAATGGTGTTCTGCTGTGTGA
TTTGATTAATAAGCTTAAACCTGGCGTCATTAAGAAGATCAATAGACTGTCTACACCAATAGCAGGATTG
GATAATATAAACGTTTTCTTGAAAGCTTGTGAACAGATTGGATTGAAAGAAGCCCAGCTTTTCCATCCTG
GAGATCTACAGGATTTATCAAATCGAGTCACTGTCAAGCAAGAAGAGACTGACAGGAGAGTGAAAAATGT
TTTGATAACATTGTACTGGCTGGGAAGAAAAGCACAAAGCAACCCGTACTATAATGGTCCCCATCTTAAT
TTGAAAGCGTTTGAGAATCTTTTAGGACAAGCACTGACGAAGGCACTCGAAGACTCCAGCTTCCTGAAAA
GAAGTGGCAGGGACAGTGGCTACGGTGACATCTGGTGTCCTGAACGTGGAGAATTTCTTGCTCCTCCAAG
GCACCATAAGAGAGAAGATTCCTTTGAAAGCTTGGACTCTTTGGGCTCGAGGTCATTGACAAGCTGCTCC
TCTGATATCACGTTGAGAGGGGGGCGTGAAGGTTTTGAAAGTGACACAGATTCGGAATTTACATTTAAGA
TGCAGGATTATAATAAAGATGATATGTCGTATCGAAGGATTTCGGCTGTTGAGCCAAAGACTGCGTTACC
CTTCAATCGTTTTTTACCCAACAAAAGTAGACAGCCATCCTATGTACCAGCACCTCTGAGAAAGAAAAAG
CCAGACAAACATGAGGATAACAGAAGAAGTTGGGCAAGCCCGGTTTATACAGAAGCAGATGGAACATTTT
CAAGTAATCAGAGGAGGATTTGGGGCACCAATGTGGAGAACTGGCCAACTGTACAAGGAACTTCAAAGTC
CTCTTGTTATTTGGAAGAGGAAAAAGCAAAGACAAGAAGCATACCCAACATTGTAAAGGATGATCTTTAT
GTGCGCAAGCTCAGTCCAGTCATGCCAAACCCAGGGAATGCTTTTGATCAGTTTCTTCCCAAATGTTGGA
CCCCAGAAGATGTGAACTGGAAAAGAATAAAAAGGGAAACTTATAAGCCATGGTATAAAGAATTTCAGGG
ATTCAGTCAGTTTTTACTGCTTCAGGCCCTCCAAACATACTCTGATGACATCTTGTCTTCTGAAACACAT
ACCAAAATTGATCCCACTTCTGGCCCAAGGCTCATAACCCGCAGGAAGAATCTCTCTTATGCACCAGGCT
ATAGAAGAGATGACCTCGAGATGGCAGCCCTGGATCCTGACTTAGAGAATGATGATTTCTTTGTCAGAAA
GACTGGGGCTTTCCATGCAAATCCATATGTTCTCCGAGCTTTTGAAGACTTTAGAAAGTTCTCTGAGCAA
GATGATTCTGTAGAGCGAGATATAATTTTACAGTGTAGAGAAGGTGAACTTGTACTTCCGGATTTGGAAA
AAGATGATATGATTGTTCGCCGAATTCCAGCACAGAAGAAAGAAGTGCCGCTGTCTGGGGCCCCAGATAG
ATACCACCCAGTCCCTTTTCCCGAACCCTGGACTCTTCCTCCAGAAATTCAAGCAAAATTTCTCTGTGTA
CTTGAAAGGACATGCCCATCCAAAGAAAAAAGTAATAGCTGTAGAATATTAGTTCCTTCATATCGGCAGA
AGAAAGATGACATGCTGACACGTAAGATTCAGTCCTGGAAACTGGGAACTACCGTGCCTCCCATCAGTTT
CACCCCTGGCCCCTGCAGTGAGGCTGACTTGAAGAGATGGGAGGCCATCCGGGAGGCCAGCAGACTTAGG
CACAAGAAAAGGCTGATGGTGGAGAGACTCTTTCAAAAGATTTATGGTGAGAATGGGAGTAAGTCCATGA
GTGATGTCAGCGCAGAAGATGTTCAAAACTTGCGTCAGCTGCGTTACGAGGAGATGCAGAAAATAAAATC
ACAATTAAAAGAACAAGATCAGAAATGGCAGGATGACCTTGCAAAATGGAAAGATCGTCGAAAAAGTTAC
ACTTCAGATCTGCAGAAGAAAAAAGAAGAGAGAGAAGAAATTGAAAAGCAGGCACTTGAGAAGTCTAAGA
GAAGCTCTAAGACGTTTAAGGAAATGCTGCAGGACAGGGAATCCCAAAATCAAAAGTCTACAGTTCCGTC
AAGAAGGAGAATGTATTCTTTTGATGATGTGCTGGAGGAAGGAAAGCGACCCCCTACAATGACTGTGTCA
GAAGCAAGTTACCAGAGTGAGAGAGTAGAAGAGAAGGGAGCAACTTATCCTTCAGAAATTCCCAAAGAAG
ATTCTACCACTTTTGCAAAAAGAGAGGACCGTGTAACAACTGAAATTCAGCTTCCTTCTCAAAGTCCTGT
GGAAGAACAAAGCCCAGCCTCTTTGTCTTCTCTGCGTTCACGGAGCACACAAATGGAATCAACTCGTGTT
TCAGCTTCTCTCCCCAGAAGTTACCGGAAAACTGATACAGTCAGGTTAACATCTGTGGTCACACCAAGAC
CCTTTGGCTCTCAGACAAGGGGAATCTCATCACTCCCCAGATCTTACACGATGGATGATGCTTGGAAGTA
TAATGGAGATGTTGAAGACATTAAGAGAACTCCAAACAATGTGGTCAGCACCCCTGCACCAAGCCCGGAC
GCAAGCCAACTGGCTTCAAGCTTATCTAGCCAGAAAGAGGTAGCAGCAACAGAAGAAGATGTGACAAGGC
TGCCCTCTCCTACATCCCCCTTCTCATCTCTTTCCCAAGACCAGGCTGCCACTTCTAAAGCCACATTGTC
TTCCACATCTGGTCTTGATTTAATGTCTGAATCTGGAGAAGGGGAAATCTCCCCACAAAGAGAAGTCTCA
AGATCCCAGGATCAGTTCAGTGATATGAGAATCAGCATAAACCAGACGCCTGGGAAGAGTCTTGACTTTG
GGTTTACAATAAAATGGGATATTCCTGGGATCTTCGTAGCATCAGTTGAAGCAGGTAGCCCAGCAGAATT
TTCTCAGCTACAAGTAGATGATGAAATTATTGCTATTAACAACACCAAGTTTTCATATAACGATTCAAAA
GAGTGGGAGGAAGCCATGGCTAAGGCTCAAGAAACTGGACACCTAGTGATGGATGTGAGGCGCTATGGAA
AGGCTGGTTCACCTGAAACAAAGTGGATTGATGCAACTTCTGGAATTTACAACTCAGAAAAATCTTCAAA
TCTATCTGTAACAACTGATTTCTCCGAAAGCCTTCAGAGTTCTAATATTGAATCCAAAGAAATCAATGGA
ATTCATGATGAAAGCAATGCTTTTGAATCAAAAGCATCTGAATCCATTTCTTTGAAAAACTTAAAAAGGC
GATCACAATTTTTTGAACAAGGAAGCTCTGATTCGGTGGTTCCTGATCTTCCAGTTCCAACCATCAGTGC
CCCGAGTCGCTGGGTGTGGGATCAAGAGGAGGAGCGGAAGCGGCAGGAGAGGTGGCAGAAGGAGCAGGAC
CGCCTACTGCAGGAAAAATATCAACGTGAGCAGGAGAAACTGAGGGAAGAGTGGCAAAGGGCCAAACAGG
AGGCAGAGAGAGAGAATTCCAAGTACTTGGATGAGGAACTGATGGTCCTAAGCTCAAACAGCATGTCTCT
GACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGCTACCTGGAGTGAAGGGTCCAAGTCTTCAGACAGA
GAAGGAACCCGAGCAGGAGAAGAGGAGAGGAGACAGCCACAAGAGGAAGTTGTTCATGAGGACCAAGGAA
AGAAGCCGCAGGATCAGCTTGTTATTGAGAGAGAGAGGAAATGGGAGCAACAGCTTCAGGAAGAGCAAGA
GCAAAAGCGGCTTCAGGCTGAGGCTGAGGAGCAGAAGCGTCCTGCGGAGGAGCAGAAGCGCCAGGCAGAG
ATAGAGCGGGAAACATCAGTCAGAATATACCAGTACAGGAGGCCTGTTGATTCCTATGATATACCAAAGA
CAGAAGAAGCATCTTCAGGTTTTCTTCCTGGTGACAGGAATAAATCCAGATCTACTACTGAACTGGATGA
TTACTCCACAAATAAAAATGGAAACAATAAATATTTAGACCAAATTGGGAACATGACCTCTTCACAGAGG
AGATCCAAGAAAGAACAAGTACCATCAGGAGCAGAATTGGAGAGGCAACAAATCCTTCAGGAAATGAGGA
AGAGAACACCCCTTCACAATGACAACAGCTGGATCCGACAGCGCAGTGCCAGTGTCAACAAAGAGCCTGT
TAGTCTTCCTGGGATCATGAGAAGAGGCGAATCTTTAGATAACCTGGACTCCCCCCGATCCAATTCTTGG
AGACAGCCTCCTTGGCTCAATCAGCCCACAGGATTCTATGCTTCTTCCTCTGTGCAAGACTTTAGTCGCC
CACCACCTCAGCTGGTGTCCACATCAAACCGTGCCTACATGCGGAACCCCTCCTCCAGCGTGCCCCCACC
TTCAGCTGGCTCCGTGAAGACCTCCACCACAGGTGTGGCCACCACACAGTCCCCCACCCCGAGAAGCCAT
TCCCCTTCAGCTTCACAGTCAGGCTCTCAGCTGCGTAACAGGTCAGTCAGTGGGAAGCGCATATGCTCCT
ACTGCAATAACATTCTGGGCAAAGGAGCCGCCATGATCATCGAGTCCCTGGGTCTTTGTTATCATTTGCA
TTGTTTTAAGTGTGTTGCCTGTGAGTGTGACCTCGGAGGCTCTTCCTCAGGAGCTGAAGTCAGGATCAGA
AACCACCAACTGTACTGCAACGACTGCTATCTCAGATTCAAATCTGGACGGCCAACCGCCATGTGA

Translation (1631 aa):
MEGLEEAEANCSVAFAEAQRWVEAVTEKNFETKDFRASLENGVLLCDLINKLKPGVIKKINRLSTPIAGL
DNINVFLKACEQIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRVKNVLITLYWLGRKAQSNPYYNGPHLN
LKAFENLLGQALTKALEDSSFLKRSGRDSGYGDIWCPERGEFLAPPRHHKREDSFESLDSLGSRSLTSCS
SDITLRGGREGFESDTDSEFTFKMQDYNKDDMSYRRISAVEPKTALPFNRFLPNKSRQPSYVPAPLRKKK
PDKHEDNRRSWASPVYTEADGTFSSNQRRIWGTNVENWPTVQGTSKSSCYLEEEKAKTRSIPNIVKDDLY
VRKLSPVMPNPGNAFDQFLPKCWTPEDVNWKRIKRETYKPWYKEFQGFSQFLLLQALQTYSDDILSSETH
TKIDPTSGPRLITRRKNLSYAPGYRRDDLEMAALDPDLENDDFFVRKTGAFHANPYVLRAFEDFRKFSEQ
DDSVERDIILQCREGELVLPDLEKDDMIVRRIPAQKKEVPLSGAPDRYHPVPFPEPWTLPPEIQAKFLCV
LERTCPSKEKSNSCRILVPSYRQKKDDMLTRKIQSWKLGTTVPPISFTPGPCSEADLKRWEAIREASRLR
HKKRLMVERLFQKIYGENGSKSMSDVSAEDVQNLRQLRYEEMQKIKSQLKEQDQKWQDDLAKWKDRRKSY
TSDLQKKKEEREEIEKQALEKSKRSSKTFKEMLQDRESQNQKSTVPSRRRMYSFDDVLEEGKRPPTMTVS
EASYQSERVEEKGATYPSEIPKEDSTTFAKREDRVTTEIQLPSQSPVEEQSPASLSSLRSRSTQMESTRV
SASLPRSYRKTDTVRLTSVVTPRPFGSQTRGISSLPRSYTMDDAWKYNGDVEDIKRTPNNVVSTPAPSPD
ASQLASSLSSQKEVAATEEDVTRLPSPTSPFSSLSQDQAATSKATLSSTSGLDLMSESGEGEISPQREVS
RSQDQFSDMRISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSK
EWEEAMAKAQETGHLVMDVRRYGKAGSPETKWIDATSGIYNSEKSSNLSVTTDFSESLQSSNIESKEING
IHDESNAFESKASESISLKNLKRRSQFFEQGSSDSVVPDLPVPTISAPSRWVWDQEEERKRQERWQKEQD
RLLQEKYQREQEKLREEWQRAKQEAERENSKYLDEELMVLSSNSMSLTTREPSLATWEATWSEGSKSSDR
EGTRAGEEERRQPQEEVVHEDQGKKPQDQLVIERERKWEQQLQEEQEQKRLQAEAEEQKRPAEEQKRQAE
IERETSVRIYQYRRPVDSYDIPKTEEASSGFLPGDRNKSRSTTELDDYSTNKNGNNKYLDQIGNMTSSQR
RSKKEQVPSGAELERQQILQEMRKRTPLHNDNSWIRQRSASVNKEPVSLPGIMRRGESLDNLDSPRSNSW
RQPPWLNQPTGFYASSSVQDFSRPPPQLVSTSNRAYMRNPSSSVPPPSAGSVKTSTTGVATTQSPTPRSH
SPSASQSGSQLRNRSVSGKRICSYCNNILGKGAAMIIESLGLCYHLHCFKCVACECDLGGSSSGAEVRIR
NHQLYCNDCYLRFKSGRPTAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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