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Report for CCDS41947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41947.1 Public Homo sapiens 14 TRAPPC6B 24 110 108 CCDS HistoryNCBI Gene:122553Re-query CCDS DB by CCDS ID:41947.1Re-query CCDS DB by GeneID:122553See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 41947.1
This CCDS ID represents the longer isoform encoded by the TRAPPC6B gene. The shorter isoform is represented by CCDS9670.1.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41947.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330149.10 ENSP00000330289.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330149.10Link to Ensembl Protein Viewer:ENSP00000330289.5Re-query CCDS DB by Nucleotide ID:ENST00000330149Re-query CCDS DB by Protein ID:ENSP00000330289
Original member Current member NCBI NM_001079537.2 NP_001073005.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001079537.2Link to Protein Sequence:NP_001073005.1Re-query CCDS DB by Nucleotide ID:NM_001079537Re-query CCDS DB by Protein ID:NP_001073005Link to BLAST:NP_001073005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073005.1 158 Q86SZ2-1 158 100% 0 0

Chromosomal Locations for CCDS 41947.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 39150350 39150381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 39151746 39151839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 39154211 39154294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 39158285 39158402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 39159483 39159550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 39170015 39170095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGCGGATGAGGCGTTGTTTTTGCTTCTCCATAACGAGATGGTGTCTGGAGTGTACAAGTCCGCGGAGC
AGGGGGAGGTGGAAAACGGACGATGTATTACTAAGCTGGAAAACATGGGGTTTCGAGTGGGACAAGGATT
GATAGAAAGGTTTACAAAAGATACTGCAAGGTTCAAGGATGAGTTAGATATCATGAAGTTCATTTGTAAA
GATTTTTGGACTACGGTATTCAAGAAACAAATCGACAATCTAAGGACAAATCATCAGGGCATCTATGTAC
TTCAGGACAACAAATTTCGCCTGCTTACTCAGATGTCTGCAGGAAAACAGTATTTAGAACATGCATCTAA
GTATTTAGCATTTACGTGTGGCTTAATCAGAGGTGGCTTATCAAACTTGGGAATAAAAAGTATTGTAACA
GCTGAAGTGTCTTCAATGCCTGCTTGCAAATTTCAGGTGATGATACAGAAGCTGTAG

Translation (158 aa):
MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICK
DFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVT
AEVSSMPACKFQVMIQKL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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