NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45634.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45634.2 Public Homo sapiens 17 SEBOX 24 110 108 CCDS HistoryNCBI Gene:645832Re-query CCDS DB by CCDS ID:45634.2Re-query CCDS DB by GeneID:645832See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 45634.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript and conservation data, and by the allele represented in the GRCh38 reference genome assembly.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 45634.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536498.6 ENSP00000444503.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000536498.6Link to Ensembl Protein Viewer:ENSP00000444503.3Re-query CCDS DB by Nucleotide ID:ENST00000536498Re-query CCDS DB by Protein ID:ENSP00000444503
Original member Current member NCBI NM_001080837.4 NP_001074306.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080837.4Link to Protein Sequence:NP_001074306.3Re-query CCDS DB by Nucleotide ID:NM_001080837Re-query CCDS DB by Protein ID:NP_001074306Link to BLAST:NP_001074306.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074306.3 190 Q9HB31 190 100% 0 0

Chromosomal Locations for CCDS 45634.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28364268 28364648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28364795 28364955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28365121 28365151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGCCCAGCCCTGTGGATGCATCCTCAGCAGACGGTGGCAGCGGGTTGGGTTCCCACCGGAGAAAGCGGA
CCACCTTCAGCAAAGGGCAGCTACTGGAGCTGGAGAGGGCGTTTGCAGCATGGCCCTACCCCAACATCAG
CACCCATGAGCACCTGGCCTGGGTCACTTGCCTTCCTGAGGCCAAGGTACAGGTGTGGTTCCAGAAGCGC
TGGGCCAAAATAATCAAGAACAGGAAGTCAGGAATTCTAAGCCCTGGGTCTGAGTGCCCCCAGAGCTCCT
GTTCTCTTCCAGACACCCTCCAGCAGCCCTGGGATCCCCAAATGCCAGGCCAACCTCCACCCTCCAGCGG
CACACCTCAGCGCACCTCAGTGTGTCGACATAGCTCCTGTCCAGCTCCTGGCTTGAGTCCACGGCAGGGC
TGGGAAGGGGCTAAAGCTGTAGCCCCATGGGGATCAGCTGGGGCTTCAGAGGTCCACCCTTCTTTAGAGC
GAGCTACTCCCCAGACTTCACTAGGCAGCCTGTCTGACCTCATCTATGCCTTGGCCATTGTCGTCAATGT
GGACCACTCCTAG

Translation (190 aa):
MPSPVDASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKR
WAKIIKNRKSGILSPGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQG
WEGAKAVAPWGSAGASEVHPSLERATPQTSLGSLSDLIYALAIVVNVDHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH