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Report for CCDS42496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42496.1 Public Homo sapiens 19 ZNF846 24 110 108 CCDS HistoryNCBI Gene:162993Re-query CCDS DB by CCDS ID:42496.1Re-query CCDS DB by GeneID:162993See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397902.7 ENSP00000380999.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397902.7Link to Ensembl Protein Viewer:ENSP00000380999.1Re-query CCDS DB by Nucleotide ID:ENST00000397902Re-query CCDS DB by Protein ID:ENSP00000380999
Original member Current member NCBI NM_001077624.3 NP_001071092.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077624.3Link to Protein Sequence:NP_001071092.1Re-query CCDS DB by Nucleotide ID:NM_001077624Re-query CCDS DB by Protein ID:NP_001071092Link to BLAST:NP_001071092.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071092.1 533 Q147U1-1 533 100% 0 0

Chromosomal Locations for CCDS 42496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9757475 9758764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9759860 9759942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9762082 9762168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9763282 9763408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9764936 9764950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGATTCTTCTCAGCACTTAGTGACCTTTGAGGATGTGGCTGTGGACTTTACCCAGGAGGAGTGGACTT
TGTTGGATCAAGCCCAGAGAGATCTCTACAGAGATGTGATGTTGGAGAACTACAAGAATCTCATTATACT
AGCAGGGTCTGAATTATTCAAACGTAGTCTCATGTCTGGATTGGAACAAATGGAAGAGCTGAGGACAGGA
GTGACAGGAGTTCTGCAGGAATTGGATTTGCAACTCAAAACCAAAGGCTCCCCACTGCTGCAAGATATTT
CTGCAGAAAGATCACCAAATGGAGTACAATTGGAGAGAAGCAATACTGCAGAGAAACTGTATGACTCTAA
CCATTCTGGAAAAGTCTTCAATGAACACCCATTTCTTATGACTCACATGATAACTCACATTGGAGAGAAA
ACTTCTGAGGATAATCAGAGTGGAAAAGCCTTAAGAAAGAACTTTCCTCATAGTTTTTACAAGAAAAGTC
ATGCTGAGGGGAAAATGCCTAAGTGTGTTAAACATGAAAAAGCCTTCAACCAGTTTCCAAATCTTACTAG
GCAGAATAAAACTCACACACAAGAGAAATTGTGTGAATGCAAAGACTGTTGGAGAACTTTTCTTAATCAG
TCATCCCTTAAGTTACATATAAGATCTCACAATGGAGACAAACACTATGTATGTAAGGAATGTGGGAAAG
CCTTCAGTAATTCCTCACACCTTATAGGACATGGAAGAATTCACAGTGGAGAGAAGCCCTATGTCTGTAA
AGAATGTGGTAAAGCTTTCACTCAATCCACAGGACTTAAATTACACATCAGAACTCACAGTGGAGAAAAA
CCATATAAATGTAAAGAGTGTGGGAAAGCCTTCACCCATTCTTCATACCTTACTGATCATACAAGAATCC
ACAGTGGAAAGAAGCCCTATGTATGTATGGAATGTGGAAAAGCCTTCACTAGATCCACAGGACTTATTTT
ACACATGCGAATTCACACTGGAGAAAAGCCATATGAATGTAAGGAGTGTGGAAAAGCTTTTATTCATTCC
TCATACCTTACAAAACATGTAAGGATTCACAGTGGAGAGAAGCTGTATTTATGTAAGGCATGTGGGAAAG
CTTTTACTCGTTCCTCAGGACTTGTTTTACACATGAGAACACATACTGGAGAAAAGCCCTATGAATGTAA
AGAATGTGGGAAAGCCTTTAATAATTCCTCAATGCTTAGTCAACATGTAAGGATTCACACTGGAGAGAAG
CCATATGAATGCAAAGAATGTGGGAAAGCTTTCACTCAATCCTCGGGCCTTAGTACCCATTTAAGAACTC
ACACTGGAGAAAAGGCCTGTGAATGTAAGGAATGCGGTAAAGCATTTGCTCGTTCCACAAATCTTAATAT
GCACATGCGAACGCACACAGGAGAAAAGCCTTATGCATGTAAAGAATGTGGGAAAGCCTTCAGGTATTCC
ACATACCTTAACGTTCACACACGAACTCACACTGGAGCAAAACCATATGAATGTAAGAAATGTGGGAAAA
ACTTCACTCAATCTTCAGCACTTGCTAAACATCTAAGAACTAAGGCATGTGAAAAAACCTGA

Translation (533 aa):
MDSSQHLVTFEDVAVDFTQEEWTLLDQAQRDLYRDVMLENYKNLIILAGSELFKRSLMSGLEQMEELRTG
VTGVLQELDLQLKTKGSPLLQDISAERSPNGVQLERSNTAEKLYDSNHSGKVFNEHPFLMTHMITHIGEK
TSEDNQSGKALRKNFPHSFYKKSHAEGKMPKCVKHEKAFNQFPNLTRQNKTHTQEKLCECKDCWRTFLNQ
SSLKLHIRSHNGDKHYVCKECGKAFSNSSHLIGHGRIHSGEKPYVCKECGKAFTQSTGLKLHIRTHSGEK
PYKCKECGKAFTHSSYLTDHTRIHSGKKPYVCMECGKAFTRSTGLILHMRIHTGEKPYECKECGKAFIHS
SYLTKHVRIHSGEKLYLCKACGKAFTRSSGLVLHMRTHTGEKPYECKECGKAFNNSSMLSQHVRIHTGEK
PYECKECGKAFTQSSGLSTHLRTHTGEKACECKECGKAFARSTNLNMHMRTHTGEKPYACKECGKAFRYS
TYLNVHTRTHTGAKPYECKKCGKNFTQSSALAKHLRTKACEKT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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