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Report for CCDS45997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45997.1 Public Homo sapiens 19 TRMT1 24 110 108 CCDS HistoryNCBI Gene:55621Re-query CCDS DB by CCDS ID:45997.1Re-query CCDS DB by GeneID:55621See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45997.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221504.12 ENSP00000221504.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000221504.12Link to Ensembl Protein Viewer:ENSP00000221504.7Re-query CCDS DB by Nucleotide ID:ENST00000221504Re-query CCDS DB by Protein ID:ENSP00000221504
Original member Current member NCBI NM_001142554.3 NP_001136026.1 Accepted alive Link to Nucleotide Sequence:NM_001142554.3Link to Protein Sequence:NP_001136026.1Re-query CCDS DB by Nucleotide ID:NM_001142554Re-query CCDS DB by Protein ID:NP_001136026Link to BLAST:NP_001136026.1
Original member Current member NCBI NM_001351760.2 NP_001338689.1 Accepted alive Link to Nucleotide Sequence:NM_001351760.2Link to Protein Sequence:NP_001338689.1Re-query CCDS DB by Nucleotide ID:NM_001351760Re-query CCDS DB by Protein ID:NP_001338689Link to BLAST:NP_001338689.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136026.1 630 Q9NXH9-2 630 100% 0 0
NP_001338689.1 630 Q9NXH9-2 630 100% 0 0

Chromosomal Locations for CCDS 45997.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13104935 13105081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13105267 13105396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13105487 13105606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13107574 13107650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13107751 13107859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13109381 13109466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13109550 13109684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13109769 13109838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13110158 13110306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13112705 13112817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13112896 13113011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13115279 13115466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13115626 13115768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13115997 13116052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13116146 13116399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGCAAGGATCGTCTCTGTGGCTAAGCCTCACTTTCCGCTCCGCCCGGGTGCTCTCTAGAGCCCGGTTTT
TCGAGTGGCAGTCTCCAGGGCTGCCGAATACAGCAGCGATGGAGAACGGCACCGGGCCCTACGGAGAAGA
ACGTCCACGTGAAGTCCAGGAGACGACAGTCACCGAGGGGGCTGCCAAAATCGCCTTTCCCAGTGCCAAC
GAGGTCTTTTATAACCCGGTGCAGGAATTCAATCGGGACCTGACATGTGCTGTGATCACCGAGTTTGCTC
GCATTCAGCTTGGGGCCAAAGGAATCCAGATCAAGGTTCCAGGAGAGAAGGACACGCAAAAAGTGGTCGT
GGACTTGTCAGAGCAAGAGGAGGAAAAGGTTGAACTGAAAGAGAGTGAAAACCTGGCCTCAGGAGACCAA
CCTCGCACAGCGGCCGTGGGGGAGATCTGTGAGGAAGGCCTGCATGTGCTGGAAGGCCTGGCAGCTTCAG
GCCTACGTTCCATTCGATTTGCCCTAGAGGTGCCTGGGCTCAGATCTGTGGTTGCAAACGATGCCTCCAC
CCGGGCTGTGGATCTCATACGCCGGAATGTCCAGCTCAATGACGTGGCCCACCTGGTACAGCCGAGCCAA
GCAGATGCCCGGATGCTGATGTACCAGCACCAGAGGGTGTCGGAGAGGTTTGACGTCATCGATCTGGACC
CCTATGGCAGCCCAGCCACCTTCCTGGATGCAGCTGTGCAGGCTGTGAGTGAAGGAGGGTTGCTGTGTGT
GACCTGCACAGACATGGCGGTGTTGGCGGGGAACAGCGGGGAGACGTGCTACAGCAAGTACGGGGCCATG
GCCCTCAAGAGCCGGGCCTGCCACGAGATGGCCCTGAGAATCGTCCTGCACAGCCTGGACCTCCGCGCCA
ACTGCTACCAGCGCTTCGTGGTGCCGCTGCTCAGCATCAGCGCTGACTTCTACGTGCGTGTTTTTGTCCG
TGTCTTCACCGGCCAGGCCAAGGTCAAGGCCTCAGCCAGGGCCAAGTTCTCTGCAGCCTGTGGTCCCCCT
GTGACCCCCGAGTGTGAACACTGTGGGCAACGACACCAGCTTGGTGGCCCCATGTGGGCAGAGCCCATCC
ATGACCTGGATTTTGTGGGCCGTGTCCTGGAGGCTGTGAGCGCTAACCCCGGCCGCTTCCACACCTCGGA
GCGGATCCGAGGGGTCCTGAGCGTCATCACTGAGGAGCTCCCGGACGTGCCTCTGTACTACACCCTGGAC
CAGCTGAGCAGCACCATCCACTGCAACACACCAAGCCTCCTGCAGTTGCGGTCGGCCCTCCTCCACGCTG
ACTTCCGGGTCTCACTCTCCCACGCCTGTAAGAACGCTGTGAAGACGGATGCCCCTGCCTCTGCCCTCTG
GGACATCATGCGTTGCTGGGAGAAGGAATGTCCGGTGAAACGGGAGCGACTATCAGAGACTAGCCCAGCG
TTCCGCATTCTCAGTGTGGAGCCCAGGCTGCAGGCCAACTTCACCATCCGGGAAGATGCCAACCCCAGCT
CCCGACAGCGAGGACTCAAGCGCTTCCAGGCTAACCCGGAGGCCAACTGGGGTCCCCGGCCTCGTGCCCG
GCCAGGGGGCAAGGCGGCCGACGAAGCTATGGAGGAGAGACGCAGGCTGCTTCAGAACAAGCGGAAGGAG
CCGCCGGAAGATGTGGCCCAGCGGGCTGCCCGGCTCAAGACATTTCCTTGCAAGAGGTTTAAGGAGGGCA
CCTGTCAACGCGGGGACCAGTGCTGCTACTCCCACAGCCCCCCGACACCCAGGGTTTCTGCTGATGCTGC
CCCTGACTGTCCAGAGACCTCCAACCAGACCCCCCCTGGACCTGGGGCTGCCGCTGGGCCAGGCATAGAC
TGA

Translation (630 aa):
MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPYGEERPREVQETTVTEGAAKIAFPSAN
EVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLSEQEEEKVELKESENLASGDQ
PRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQ
ADARMLMYQHQRVSERFDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAM
ALKSRACHEMALRIVLHSLDLRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASARAKFSAACGPP
VTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPGRFHTSERIRGVLSVITEELPDVPLYYTLD
QLSSTIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPASALWDIMRCWEKECPVKRERLSETSPA
FRILSVEPRLQANFTIREDANPSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKE
PPEDVAQRAARLKTFPCKRFKEGTCQRGDQCCYSHSPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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