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Report for CCDS12391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12391.1 Public Homo sapiens 19 HOMER3 24 110 108 CCDS HistoryNCBI Gene:9454Re-query CCDS DB by CCDS ID:12391.1Re-query CCDS DB by GeneID:9454See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12391.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392351.8 ENSP00000376162.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392351.8Link to Ensembl Protein Viewer:ENSP00000376162.2Re-query CCDS DB by Nucleotide ID:ENST00000392351Re-query CCDS DB by Protein ID:ENSP00000376162
Original member Current member EBI ENST00000539827.5 ENSP00000439937.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539827.5Link to Ensembl Protein Viewer:ENSP00000439937.1Re-query CCDS DB by Nucleotide ID:ENST00000539827Re-query CCDS DB by Protein ID:ENSP00000439937
Original member Current member EBI ENST00000542541.6 ENSP00000446026.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542541.6Link to Ensembl Protein Viewer:ENSP00000446026.1Re-query CCDS DB by Nucleotide ID:ENST00000542541Re-query CCDS DB by Protein ID:ENSP00000446026
Original member Current member NCBI NM_001145722.2 NP_001139194.1 Accepted alive Link to Nucleotide Sequence:NM_001145722.2Link to Protein Sequence:NP_001139194.1Re-query CCDS DB by Nucleotide ID:NM_001145722Re-query CCDS DB by Protein ID:NP_001139194Link to BLAST:NP_001139194.1
Original member Current member NCBI NM_004838.4 NP_004829.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004838.4Link to Protein Sequence:NP_004829.3Re-query CCDS DB by Nucleotide ID:NM_004838Re-query CCDS DB by Protein ID:NP_004829Link to BLAST:NP_004829.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139194.1 361 Q9NSC5-1 361 100% 0 0
NP_004829.3 361 Q9NSC5-1 361 100% 0 0

Chromosomal Locations for CCDS 12391.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18929443 18929634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18931325 18931411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18931509 18931625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18931976 18932132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18932924 18933045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18934303 18934410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18938353 18938484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18938728 18938884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18938969 18938982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGTCCACAGCCAGGGAGCAGCCAATCTTCAGCACACGGGCGCACGTGTTCCAAATTGACCCAGCCACCA
AGCGAAACTGGATCCCAGCGGGCAAGCACGCACTCACTGTCTCCTATTTCTACGATGCCACCCGCAATGT
GTACCGCATCATCAGCATCGGAGGCGCCAAGGCCATCATCAACAGCACTGTCACTCCCAACATGACCTTC
ACCAAAACTTCCCAGAAGTTCGGGCAGTGGGCCGACAGTCGCGCCAACACAGTCTACGGCCTGGGCTTTG
CCTCTGAACAGCATCTGACACAGTTTGCCGAGAAGTTCCAGGAAGTGAAGGAAGCAGCCAGGCTGGCCAG
GGAGAAATCTCAGGATGGCGGGGAGCTCACCAGTCCAGCCCTGGGGCTCGCCTCCCACCAGGTGCCCCCG
AGCCCTCTCGTCAGTGCCAACGGCCCCGGCGAGGAAAAACTGTTCCGCAGCCAGAGCGCTGATGCCCCCG
GCCCCACAGAGCGCGAGCGGCTAAAGAAGATGTTGTCTGAGGGCTCCGTGGGCGAGGTACAGTGGGAGGC
CGAGTTTTTCGCACTGCAGGACAGCAACAACAAGCTGGCAGGCGCCCTGCGAGAGGCCAACGCCGCCGCA
GCCCAGTGGAGGCAGCAGCTGGAGGCTCAGCGTGCAGAGGCCGAGCGGCTGCGGCAGCGGGTGGCTGAGC
TGGAGGCTCAGGCAGCTTCAGAGGTGACCCCCACCGGTGAGAAGGAGGGGCTGGGCCAGGGCCAGTCGCT
GGAACAGCTGGAAGCTCTGGTGCAAACCAAGGACCAGGAGATTCAGACCCTGAAGAGTCAGACTGGGGGG
CCCCGCGAGGCCCTGGAGGCTGCCGAGCGTGAGGAGACTCAGCAGAAGGTGCAGGACCTGGAGACCCGCA
ATGCGGAGTTGGAGCACCAGCTGCGGGCGATGGAGCGCAGCCTGGAGGAGGCACGGGCAGAGCGGGAGCG
GGCGCGGGCTGAGGTGGGCCGGGCAGCGCAGCTGCTGGACGTCAGCCTGTTTGAGCTGAGTGAGCTGCGT
GAGGGCCTGGCCCGCCTGGCTGAGGCTGCGCCCTGA

Translation (361 aa):
MSTAREQPIFSTRAHVFQIDPATKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVTPNMTF
TKTSQKFGQWADSRANTVYGLGFASEQHLTQFAEKFQEVKEAARLAREKSQDGGELTSPALGLASHQVPP
SPLVSANGPGEEKLFRSQSADAPGPTERERLKKMLSEGSVGEVQWEAEFFALQDSNNKLAGALREANAAA
AQWRQQLEAQRAEAERLRQRVAELEAQAASEVTPTGEKEGLGQGQSLEQLEALVQTKDQEIQTLKSQTGG
PREALEAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELR
EGLARLAEAAP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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